Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09950

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09940 and CA264_09945 are separated by 56 nucleotidesCA264_09945 and CA264_09950 are separated by 27 nucleotidesCA264_09950 and CA264_09955 are separated by 10 nucleotidesCA264_09955 and CA264_09960 overlap by 4 nucleotides CA264_09940: CA264_09940 - conjugative transposon protein TraM, at 2,315,242 to 2,316,486 _09940 CA264_09945: CA264_09945 - conjugative transposon protein TraK, at 2,316,543 to 2,317,160 _09945 CA264_09950: CA264_09950 - conjugative transposon protein TraJ, at 2,317,188 to 2,318,399 _09950 CA264_09955: CA264_09955 - hypothetical protein, at 2,318,410 to 2,319,039 _09955 CA264_09960: CA264_09960 - hypothetical protein, at 2,319,036 to 2,319,689 _09960 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -1 0 1 2at 2316.210 kb on - strand, within CA264_09940at 2316.219 kb on + strand, within CA264_09940at 2316.219 kb on + strand, within CA264_09940at 2316.220 kb on - strand, within CA264_09940at 2316.266 kb on + strand, within CA264_09940at 2316.266 kb on + strand, within CA264_09940at 2316.269 kb on + strand, within CA264_09940at 2316.514 kb on + strandat 2316.514 kb on + strandat 2316.515 kb on - strandat 2316.515 kb on - strandat 2316.757 kb on - strand, within CA264_09945at 2316.857 kb on - strand, within CA264_09945at 2316.857 kb on - strand, within CA264_09945at 2317.016 kb on - strand, within CA264_09945at 2317.160 kb on + strandat 2317.160 kb on + strandat 2317.190 kb on - strandat 2317.498 kb on + strand, within CA264_09950at 2317.499 kb on - strand, within CA264_09950at 2317.627 kb on + strand, within CA264_09950at 2317.664 kb on + strand, within CA264_09950at 2317.774 kb on + strand, within CA264_09950at 2317.774 kb on + strand, within CA264_09950at 2317.912 kb on + strand, within CA264_09950at 2317.913 kb on - strand, within CA264_09950at 2317.919 kb on - strand, within CA264_09950at 2317.957 kb on + strand, within CA264_09950at 2317.957 kb on + strand, within CA264_09950at 2317.958 kb on - strand, within CA264_09950at 2318.124 kb on + strand, within CA264_09950at 2318.373 kb on + strandat 2318.374 kb on - strandat 2318.376 kb on + strandat 2318.376 kb on + strandat 2318.376 kb on + strandat 2318.377 kb on - strandat 2318.421 kb on + strandat 2318.669 kb on + strand, within CA264_09955at 2318.800 kb on + strand, within CA264_09955at 2318.800 kb on + strand, within CA264_09955at 2318.801 kb on - strand, within CA264_09955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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2,316,210 - CA264_09940 0.78 -0.4
2,316,219 + CA264_09940 0.78 -0.6
2,316,219 + CA264_09940 0.78 -0.4
2,316,220 - CA264_09940 0.79 -0.3
2,316,266 + CA264_09940 0.82 -1.0
2,316,266 + CA264_09940 0.82 -0.3
2,316,269 + CA264_09940 0.82 +0.1
2,316,514 + -0.8
2,316,514 + -0.7
2,316,515 - -0.6
2,316,515 - -0.3
2,316,757 - CA264_09945 0.35 -1.0
2,316,857 - CA264_09945 0.51 -0.7
2,316,857 - CA264_09945 0.51 -0.8
2,317,016 - CA264_09945 0.77 -1.1
2,317,160 + -0.7
2,317,160 + -1.5
2,317,190 - -0.8
2,317,498 + CA264_09950 0.26 -0.0
2,317,499 - CA264_09950 0.26 -0.7
2,317,627 + CA264_09950 0.36 -0.3
2,317,664 + CA264_09950 0.39 -0.1
2,317,774 + CA264_09950 0.48 +0.3
2,317,774 + CA264_09950 0.48 -1.2
2,317,912 + CA264_09950 0.60 -0.7
2,317,913 - CA264_09950 0.60 -1.5
2,317,919 - CA264_09950 0.60 +1.2
2,317,957 + CA264_09950 0.63 -0.9
2,317,957 + CA264_09950 0.63 -1.5
2,317,958 - CA264_09950 0.64 -1.0
2,318,124 + CA264_09950 0.77 +2.2
2,318,373 + +0.3
2,318,374 - -1.3
2,318,376 + -0.8
2,318,376 + -0.3
2,318,376 + -0.6
2,318,377 - -1.2
2,318,421 + -0.8
2,318,669 + CA264_09955 0.41 +0.2
2,318,800 + CA264_09955 0.62 -0.0
2,318,800 + CA264_09955 0.62 +0.5
2,318,801 - CA264_09955 0.62 -1.4

Or see this region's nucleotide sequence