Experiment: m.b. Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09940 and CA264_09945 are separated by 56 nucleotides CA264_09945 and CA264_09950 are separated by 27 nucleotides CA264_09950 and CA264_09955 are separated by 10 nucleotides CA264_09955 and CA264_09960 overlap by 4 nucleotides
CA264_09940: CA264_09940 - conjugative transposon protein TraM, at 2,315,242 to 2,316,486
_09940
CA264_09945: CA264_09945 - conjugative transposon protein TraK, at 2,316,543 to 2,317,160
_09945
CA264_09950: CA264_09950 - conjugative transposon protein TraJ, at 2,317,188 to 2,318,399
_09950
CA264_09955: CA264_09955 - hypothetical protein, at 2,318,410 to 2,319,039
_09955
CA264_09960: CA264_09960 - hypothetical protein, at 2,319,036 to 2,319,689
_09960
Position (kb)
2317
2318
2319 Strain fitness (log2 ratio)
-1
0
1
2 at 2316.210 kb on - strand, within CA264_09940 at 2316.219 kb on + strand, within CA264_09940 at 2316.219 kb on + strand, within CA264_09940 at 2316.220 kb on - strand, within CA264_09940 at 2316.266 kb on + strand, within CA264_09940 at 2316.266 kb on + strand, within CA264_09940 at 2316.269 kb on + strand, within CA264_09940 at 2316.514 kb on + strand at 2316.514 kb on + strand at 2316.515 kb on - strand at 2316.515 kb on - strand at 2316.757 kb on - strand, within CA264_09945 at 2316.857 kb on - strand, within CA264_09945 at 2316.857 kb on - strand, within CA264_09945 at 2317.016 kb on - strand, within CA264_09945 at 2317.160 kb on + strand at 2317.160 kb on + strand at 2317.190 kb on - strand at 2317.498 kb on + strand, within CA264_09950 at 2317.499 kb on - strand, within CA264_09950 at 2317.627 kb on + strand, within CA264_09950 at 2317.664 kb on + strand, within CA264_09950 at 2317.774 kb on + strand, within CA264_09950 at 2317.774 kb on + strand, within CA264_09950 at 2317.912 kb on + strand, within CA264_09950 at 2317.913 kb on - strand, within CA264_09950 at 2317.919 kb on - strand, within CA264_09950 at 2317.957 kb on + strand, within CA264_09950 at 2317.957 kb on + strand, within CA264_09950 at 2317.958 kb on - strand, within CA264_09950 at 2318.124 kb on + strand, within CA264_09950 at 2318.373 kb on + strand at 2318.374 kb on - strand at 2318.376 kb on + strand at 2318.376 kb on + strand at 2318.376 kb on + strand at 2318.377 kb on - strand at 2318.421 kb on + strand at 2318.669 kb on + strand, within CA264_09955 at 2318.800 kb on + strand, within CA264_09955 at 2318.800 kb on + strand, within CA264_09955 at 2318.801 kb on - strand, within CA264_09955
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml remove 2,316,210 - CA264_09940 0.78 -0.4 2,316,219 + CA264_09940 0.78 -0.6 2,316,219 + CA264_09940 0.78 -0.4 2,316,220 - CA264_09940 0.79 -0.3 2,316,266 + CA264_09940 0.82 -1.0 2,316,266 + CA264_09940 0.82 -0.3 2,316,269 + CA264_09940 0.82 +0.1 2,316,514 + -0.8 2,316,514 + -0.7 2,316,515 - -0.6 2,316,515 - -0.3 2,316,757 - CA264_09945 0.35 -1.0 2,316,857 - CA264_09945 0.51 -0.7 2,316,857 - CA264_09945 0.51 -0.8 2,317,016 - CA264_09945 0.77 -1.1 2,317,160 + -0.7 2,317,160 + -1.5 2,317,190 - -0.8 2,317,498 + CA264_09950 0.26 -0.0 2,317,499 - CA264_09950 0.26 -0.7 2,317,627 + CA264_09950 0.36 -0.3 2,317,664 + CA264_09950 0.39 -0.1 2,317,774 + CA264_09950 0.48 +0.3 2,317,774 + CA264_09950 0.48 -1.2 2,317,912 + CA264_09950 0.60 -0.7 2,317,913 - CA264_09950 0.60 -1.5 2,317,919 - CA264_09950 0.60 +1.2 2,317,957 + CA264_09950 0.63 -0.9 2,317,957 + CA264_09950 0.63 -1.5 2,317,958 - CA264_09950 0.64 -1.0 2,318,124 + CA264_09950 0.77 +2.2 2,318,373 + +0.3 2,318,374 - -1.3 2,318,376 + -0.8 2,318,376 + -0.3 2,318,376 + -0.6 2,318,377 - -1.2 2,318,421 + -0.8 2,318,669 + CA264_09955 0.41 +0.2 2,318,800 + CA264_09955 0.62 -0.0 2,318,800 + CA264_09955 0.62 +0.5 2,318,801 - CA264_09955 0.62 -1.4
Or see this region's nucleotide sequence