Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08735

Experiment: m.b. Fusidic 0.0005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_08730 and CA264_08735 are separated by 321 nucleotidesCA264_08735 and CA264_08740 are separated by 436 nucleotides CA264_08730: CA264_08730 - efflux transporter periplasmic adaptor subunit, at 2,032,881 to 2,033,963 _08730 CA264_08735: CA264_08735 - hypothetical protein, at 2,034,285 to 2,034,710 _08735 CA264_08740: CA264_08740 - serine hydrolase, at 2,035,147 to 2,038,173 _08740 Position (kb) 2034 2035Strain fitness (log2 ratio) -2 -1 0 1 2at 2033.389 kb on + strand, within CA264_08730at 2033.390 kb on - strand, within CA264_08730at 2033.390 kb on - strand, within CA264_08730at 2033.392 kb on + strand, within CA264_08730at 2033.463 kb on + strand, within CA264_08730at 2033.464 kb on - strand, within CA264_08730at 2033.686 kb on + strand, within CA264_08730at 2033.764 kb on + strand, within CA264_08730at 2033.793 kb on - strand, within CA264_08730at 2033.799 kb on + strand, within CA264_08730at 2033.801 kb on + strand, within CA264_08730at 2033.802 kb on - strand, within CA264_08730at 2033.818 kb on - strand, within CA264_08730at 2033.858 kb on + strandat 2033.868 kb on - strandat 2033.915 kb on + strandat 2033.993 kb on + strandat 2034.263 kb on + strandat 2034.263 kb on + strandat 2034.264 kb on - strandat 2034.265 kb on + strandat 2034.284 kb on - strandat 2034.284 kb on - strandat 2034.284 kb on - strandat 2034.286 kb on + strandat 2034.287 kb on - strandat 2034.358 kb on - strand, within CA264_08735at 2034.385 kb on + strand, within CA264_08735at 2034.421 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.527 kb on - strand, within CA264_08735at 2034.633 kb on - strand, within CA264_08735at 2034.640 kb on + strand, within CA264_08735at 2034.641 kb on - strand, within CA264_08735at 2034.641 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.652 kb on + strand, within CA264_08735at 2034.674 kb on + strandat 2034.675 kb on - strandat 2034.689 kb on - strandat 2034.725 kb on - strandat 2034.828 kb on + strandat 2034.840 kb on + strandat 2034.840 kb on + strandat 2034.904 kb on - strandat 2034.904 kb on - strandat 2034.915 kb on + strandat 2034.916 kb on - strandat 2034.921 kb on + strandat 2034.937 kb on - strandat 2034.980 kb on + strandat 2034.980 kb on + strandat 2035.069 kb on + strandat 2035.070 kb on - strandat 2035.070 kb on - strandat 2035.129 kb on - strandat 2035.184 kb on + strandat 2035.184 kb on + strandat 2035.196 kb on - strandat 2035.270 kb on + strandat 2035.270 kb on + strandat 2035.270 kb on + strandat 2035.270 kb on + strandat 2035.271 kb on - strandat 2035.271 kb on - strandat 2035.271 kb on - strandat 2035.271 kb on - strandat 2035.271 kb on - strandat 2035.275 kb on - strandat 2035.306 kb on - strandat 2035.415 kb on + strandat 2035.415 kb on + strandat 2035.420 kb on - strandat 2035.420 kb on - strandat 2035.581 kb on + strand, within CA264_08740at 2035.582 kb on - strand, within CA264_08740at 2035.582 kb on - strand, within CA264_08740at 2035.582 kb on - strand, within CA264_08740at 2035.615 kb on + strand, within CA264_08740at 2035.615 kb on + strand, within CA264_08740at 2035.657 kb on - strand, within CA264_08740at 2035.674 kb on - strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.678 kb on - strand, within CA264_08740at 2035.679 kb on + strand, within CA264_08740at 2035.680 kb on - strand, within CA264_08740at 2035.680 kb on - strand, within CA264_08740at 2035.680 kb on - strand, within CA264_08740

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
remove
2,033,389 + CA264_08730 0.47 -2.1
2,033,390 - CA264_08730 0.47 -0.8
2,033,390 - CA264_08730 0.47 -1.6
2,033,392 + CA264_08730 0.47 -0.0
2,033,463 + CA264_08730 0.54 +0.1
2,033,464 - CA264_08730 0.54 -0.3
2,033,686 + CA264_08730 0.74 -0.3
2,033,764 + CA264_08730 0.82 -0.8
2,033,793 - CA264_08730 0.84 -0.3
2,033,799 + CA264_08730 0.85 +0.0
2,033,801 + CA264_08730 0.85 -0.2
2,033,802 - CA264_08730 0.85 -1.1
2,033,818 - CA264_08730 0.87 -1.6
2,033,858 + -0.6
2,033,868 - -0.0
2,033,915 + -0.8
2,033,993 + -0.5
2,034,263 + -0.6
2,034,263 + +0.1
2,034,264 - -0.2
2,034,265 + +0.7
2,034,284 - -0.4
2,034,284 - -0.4
2,034,284 - -0.5
2,034,286 + -0.3
2,034,287 - +0.3
2,034,358 - CA264_08735 0.17 +0.1
2,034,385 + CA264_08735 0.23 -0.2
2,034,421 + CA264_08735 0.32 -0.8
2,034,517 + CA264_08735 0.54 -0.6
2,034,517 + CA264_08735 0.54 -0.6
2,034,517 + CA264_08735 0.54 -0.6
2,034,527 - CA264_08735 0.57 +0.4
2,034,633 - CA264_08735 0.82 -0.4
2,034,640 + CA264_08735 0.83 -0.5
2,034,641 - CA264_08735 0.84 -0.5
2,034,641 - CA264_08735 0.84 -0.1
2,034,643 - CA264_08735 0.84 -0.1
2,034,643 - CA264_08735 0.84 -0.1
2,034,643 - CA264_08735 0.84 -1.0
2,034,643 - CA264_08735 0.84 +2.1
2,034,643 - CA264_08735 0.84 -0.6
2,034,652 + CA264_08735 0.86 +0.3
2,034,674 + +0.2
2,034,675 - -1.0
2,034,689 - -0.1
2,034,725 - -0.7
2,034,828 + -0.3
2,034,840 + +0.1
2,034,840 + -0.4
2,034,904 - -1.0
2,034,904 - -0.8
2,034,915 + -0.7
2,034,916 - -1.9
2,034,921 + -0.0
2,034,937 - -0.1
2,034,980 + +0.4
2,034,980 + -0.2
2,035,069 + +0.0
2,035,070 - +1.1
2,035,070 - -0.3
2,035,129 - -0.2
2,035,184 + -0.1
2,035,184 + -1.3
2,035,196 - -0.8
2,035,270 + +0.4
2,035,270 + -0.2
2,035,270 + +0.9
2,035,270 + -0.2
2,035,271 - +0.5
2,035,271 - +0.0
2,035,271 - -0.1
2,035,271 - +1.7
2,035,271 - +0.6
2,035,275 - -0.5
2,035,306 - +0.2
2,035,415 + +0.4
2,035,415 + -0.3
2,035,420 - -1.1
2,035,420 - +0.6
2,035,581 + CA264_08740 0.14 -0.6
2,035,582 - CA264_08740 0.14 +0.9
2,035,582 - CA264_08740 0.14 -0.8
2,035,582 - CA264_08740 0.14 -1.1
2,035,615 + CA264_08740 0.15 -0.2
2,035,615 + CA264_08740 0.15 -1.0
2,035,657 - CA264_08740 0.17 -1.3
2,035,674 - CA264_08740 0.17 -0.7
2,035,677 + CA264_08740 0.18 +0.4
2,035,677 + CA264_08740 0.18 +0.1
2,035,677 + CA264_08740 0.18 -0.3
2,035,677 + CA264_08740 0.18 +0.2
2,035,677 + CA264_08740 0.18 -0.0
2,035,677 + CA264_08740 0.18 +0.6
2,035,678 - CA264_08740 0.18 -0.7
2,035,679 + CA264_08740 0.18 -0.5
2,035,680 - CA264_08740 0.18 -0.3
2,035,680 - CA264_08740 0.18 -0.2
2,035,680 - CA264_08740 0.18 -0.3

Or see this region's nucleotide sequence