Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05625

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05620 and CA264_05625 are separated by 153 nucleotidesCA264_05625 and CA264_05630 are separated by 54 nucleotides CA264_05620: CA264_05620 - hypothetical protein, at 1,306,187 to 1,307,167 _05620 CA264_05625: CA264_05625 - hypothetical protein, at 1,307,321 to 1,307,851 _05625 CA264_05630: CA264_05630 - glycerol-3-phosphate dehydrogenase, at 1,307,906 to 1,308,895 _05630 Position (kb) 1307 1308Strain fitness (log2 ratio) -2 -1 0 1 2at 1306.484 kb on - strand, within CA264_05620at 1306.487 kb on + strand, within CA264_05620at 1306.539 kb on + strand, within CA264_05620at 1306.605 kb on + strand, within CA264_05620at 1306.633 kb on - strand, within CA264_05620at 1306.831 kb on - strand, within CA264_05620at 1306.847 kb on + strand, within CA264_05620at 1306.951 kb on - strand, within CA264_05620at 1306.951 kb on - strand, within CA264_05620at 1306.962 kb on + strand, within CA264_05620at 1307.030 kb on - strand, within CA264_05620at 1307.068 kb on - strand, within CA264_05620at 1307.078 kb on + strandat 1307.144 kb on + strandat 1307.144 kb on + strandat 1307.144 kb on + strandat 1307.170 kb on - strandat 1307.170 kb on - strandat 1307.185 kb on + strandat 1307.190 kb on - strandat 1307.201 kb on + strandat 1307.202 kb on - strandat 1307.232 kb on - strandat 1307.308 kb on - strandat 1307.315 kb on - strandat 1307.320 kb on + strandat 1307.321 kb on - strandat 1307.413 kb on + strand, within CA264_05625at 1307.413 kb on + strand, within CA264_05625at 1307.413 kb on + strand, within CA264_05625at 1307.414 kb on - strand, within CA264_05625at 1307.415 kb on + strand, within CA264_05625at 1307.415 kb on + strand, within CA264_05625at 1307.415 kb on + strand, within CA264_05625at 1307.415 kb on + strand, within CA264_05625at 1307.416 kb on - strand, within CA264_05625at 1307.457 kb on - strand, within CA264_05625at 1307.482 kb on + strand, within CA264_05625at 1307.505 kb on - strand, within CA264_05625at 1307.691 kb on + strand, within CA264_05625at 1307.692 kb on - strand, within CA264_05625at 1307.744 kb on + strand, within CA264_05625at 1307.794 kb on + strand, within CA264_05625at 1307.795 kb on - strand, within CA264_05625at 1307.795 kb on - strand, within CA264_05625at 1307.848 kb on - strandat 1307.962 kb on - strandat 1307.966 kb on + strandat 1307.967 kb on - strandat 1307.973 kb on + strandat 1307.976 kb on - strandat 1308.042 kb on + strand, within CA264_05630at 1308.145 kb on - strand, within CA264_05630at 1308.155 kb on + strand, within CA264_05630at 1308.336 kb on + strand, within CA264_05630at 1308.336 kb on + strand, within CA264_05630at 1308.337 kb on - strand, within CA264_05630at 1308.699 kb on - strand, within CA264_05630at 1308.699 kb on - strand, within CA264_05630at 1308.699 kb on - strand, within CA264_05630at 1308.716 kb on + strand, within CA264_05630at 1308.717 kb on - strand, within CA264_05630

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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1,306,484 - CA264_05620 0.30 -1.2
1,306,487 + CA264_05620 0.31 -0.3
1,306,539 + CA264_05620 0.36 -0.4
1,306,605 + CA264_05620 0.43 +0.2
1,306,633 - CA264_05620 0.45 -1.0
1,306,831 - CA264_05620 0.66 -2.5
1,306,847 + CA264_05620 0.67 +0.1
1,306,951 - CA264_05620 0.78 -1.2
1,306,951 - CA264_05620 0.78 -0.9
1,306,962 + CA264_05620 0.79 -0.8
1,307,030 - CA264_05620 0.86 -0.6
1,307,068 - CA264_05620 0.90 -0.2
1,307,078 + -0.1
1,307,144 + -1.0
1,307,144 + +0.0
1,307,144 + +0.3
1,307,170 - +0.6
1,307,170 - -0.8
1,307,185 + -0.0
1,307,190 - +0.2
1,307,201 + -0.5
1,307,202 - +0.4
1,307,232 - +0.2
1,307,308 - -1.0
1,307,315 - +0.4
1,307,320 + -1.2
1,307,321 - -0.6
1,307,413 + CA264_05625 0.17 -1.0
1,307,413 + CA264_05625 0.17 -0.3
1,307,413 + CA264_05625 0.17 -0.1
1,307,414 - CA264_05625 0.18 -0.3
1,307,415 + CA264_05625 0.18 -0.4
1,307,415 + CA264_05625 0.18 +0.2
1,307,415 + CA264_05625 0.18 -0.3
1,307,415 + CA264_05625 0.18 +0.2
1,307,416 - CA264_05625 0.18 -0.1
1,307,457 - CA264_05625 0.26 +0.3
1,307,482 + CA264_05625 0.30 -0.2
1,307,505 - CA264_05625 0.35 +0.8
1,307,691 + CA264_05625 0.70 -0.3
1,307,692 - CA264_05625 0.70 -0.5
1,307,744 + CA264_05625 0.80 +0.7
1,307,794 + CA264_05625 0.89 +0.9
1,307,795 - CA264_05625 0.89 -0.1
1,307,795 - CA264_05625 0.89 -1.2
1,307,848 - -0.7
1,307,962 - +1.1
1,307,966 + +1.5
1,307,967 - -0.4
1,307,973 + +0.2
1,307,976 - +0.2
1,308,042 + CA264_05630 0.14 +0.3
1,308,145 - CA264_05630 0.24 -0.2
1,308,155 + CA264_05630 0.25 +0.6
1,308,336 + CA264_05630 0.43 -0.7
1,308,336 + CA264_05630 0.43 +2.2
1,308,337 - CA264_05630 0.44 -1.0
1,308,699 - CA264_05630 0.80 +0.4
1,308,699 - CA264_05630 0.80 +0.2
1,308,699 - CA264_05630 0.80 -0.9
1,308,716 + CA264_05630 0.82 -1.4
1,308,717 - CA264_05630 0.82 -0.7

Or see this region's nucleotide sequence