Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02715

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02710 and CA264_02715 are separated by 17 nucleotidesCA264_02715 and CA264_02720 are separated by 153 nucleotidesCA264_02720 and CA264_02725 are separated by 61 nucleotides CA264_02710: CA264_02710 - hypothetical protein, at 625,227 to 626,603 _02710 CA264_02715: CA264_02715 - UDP-glucose--dolichyl-phosphate glucosyltransferase, at 626,621 to 627,313 _02715 CA264_02720: CA264_02720 - peroxiredoxin, at 627,467 to 627,955 _02720 CA264_02725: CA264_02725 - hypothetical protein, at 628,017 to 628,595 _02725 Position (kb) 626 627 628Strain fitness (log2 ratio) -2 -1 0 1 2 3at 625.654 kb on + strand, within CA264_02710at 625.654 kb on + strand, within CA264_02710at 625.654 kb on + strand, within CA264_02710at 625.655 kb on - strand, within CA264_02710at 625.657 kb on + strand, within CA264_02710at 625.657 kb on + strand, within CA264_02710at 625.658 kb on - strand, within CA264_02710at 625.659 kb on + strand, within CA264_02710at 625.659 kb on + strand, within CA264_02710at 625.659 kb on + strand, within CA264_02710at 625.659 kb on + strand, within CA264_02710at 625.660 kb on - strand, within CA264_02710at 625.660 kb on - strand, within CA264_02710at 625.660 kb on - strand, within CA264_02710at 625.660 kb on - strand, within CA264_02710at 625.660 kb on - strand, within CA264_02710at 625.660 kb on - strand, within CA264_02710at 625.660 kb on - strand, within CA264_02710at 625.691 kb on - strand, within CA264_02710at 625.701 kb on - strand, within CA264_02710at 625.701 kb on - strand, within CA264_02710at 625.701 kb on - strand, within CA264_02710at 625.701 kb on - strand, within CA264_02710at 625.701 kb on - strand, within CA264_02710at 625.703 kb on + strand, within CA264_02710at 625.753 kb on - strand, within CA264_02710at 625.782 kb on - strand, within CA264_02710at 625.783 kb on + strand, within CA264_02710at 625.901 kb on - strand, within CA264_02710at 625.903 kb on + strand, within CA264_02710at 625.904 kb on - strand, within CA264_02710at 625.904 kb on - strand, within CA264_02710at 626.011 kb on + strand, within CA264_02710at 626.060 kb on + strand, within CA264_02710at 626.103 kb on + strand, within CA264_02710at 626.103 kb on + strand, within CA264_02710at 626.104 kb on - strand, within CA264_02710at 626.182 kb on + strand, within CA264_02710at 626.183 kb on - strand, within CA264_02710at 626.186 kb on - strand, within CA264_02710at 626.199 kb on + strand, within CA264_02710at 626.199 kb on + strand, within CA264_02710at 626.260 kb on + strand, within CA264_02710at 626.260 kb on + strand, within CA264_02710at 626.278 kb on + strand, within CA264_02710at 626.279 kb on - strand, within CA264_02710at 626.286 kb on + strand, within CA264_02710at 626.329 kb on + strand, within CA264_02710at 626.330 kb on - strand, within CA264_02710at 626.330 kb on - strand, within CA264_02710at 626.429 kb on - strand, within CA264_02710at 626.456 kb on - strand, within CA264_02710at 626.497 kb on + strandat 626.512 kb on + strandat 626.513 kb on - strandat 626.542 kb on + strandat 626.628 kb on + strandat 626.632 kb on + strandat 626.632 kb on + strandat 626.632 kb on + strandat 626.633 kb on - strandat 626.633 kb on - strandat 626.636 kb on + strandat 626.637 kb on - strandat 626.637 kb on - strandat 626.654 kb on - strandat 626.655 kb on + strandat 626.678 kb on + strandat 626.874 kb on + strand, within CA264_02715at 626.874 kb on + strand, within CA264_02715at 626.875 kb on - strand, within CA264_02715at 626.969 kb on + strand, within CA264_02715at 627.014 kb on + strand, within CA264_02715at 627.100 kb on - strand, within CA264_02715at 627.210 kb on - strand, within CA264_02715at 627.283 kb on - strandat 627.302 kb on + strandat 627.313 kb on + strandat 627.314 kb on - strandat 627.323 kb on - strandat 627.341 kb on + strandat 627.364 kb on - strandat 627.403 kb on - strandat 627.420 kb on + strandat 627.440 kb on + strandat 627.449 kb on + strandat 627.581 kb on + strand, within CA264_02720at 627.587 kb on + strand, within CA264_02720at 627.592 kb on + strand, within CA264_02720at 627.593 kb on - strand, within CA264_02720at 627.644 kb on + strand, within CA264_02720at 627.679 kb on - strand, within CA264_02720at 627.679 kb on - strand, within CA264_02720at 627.728 kb on + strand, within CA264_02720at 627.728 kb on + strand, within CA264_02720at 627.728 kb on + strand, within CA264_02720at 627.751 kb on + strand, within CA264_02720at 627.758 kb on - strand, within CA264_02720at 627.793 kb on + strand, within CA264_02720at 627.827 kb on + strand, within CA264_02720at 627.827 kb on + strand, within CA264_02720at 627.828 kb on - strand, within CA264_02720at 627.828 kb on - strand, within CA264_02720at 627.828 kb on - strand, within CA264_02720at 627.832 kb on + strand, within CA264_02720at 627.832 kb on + strand, within CA264_02720at 627.833 kb on - strand, within CA264_02720at 627.858 kb on - strand, within CA264_02720at 627.858 kb on - strand, within CA264_02720at 627.865 kb on + strand, within CA264_02720at 627.894 kb on + strand, within CA264_02720at 627.895 kb on - strand, within CA264_02720at 627.951 kb on + strandat 627.959 kb on - strandat 627.996 kb on + strandat 627.997 kb on - strandat 628.067 kb on - strandat 628.067 kb on - strandat 628.089 kb on - strand, within CA264_02725at 628.089 kb on - strand, within CA264_02725at 628.104 kb on + strand, within CA264_02725at 628.105 kb on - strand, within CA264_02725at 628.105 kb on - strand, within CA264_02725at 628.142 kb on - strand, within CA264_02725at 628.142 kb on - strand, within CA264_02725at 628.153 kb on + strand, within CA264_02725at 628.153 kb on + strand, within CA264_02725at 628.154 kb on - strand, within CA264_02725at 628.200 kb on + strand, within CA264_02725at 628.201 kb on - strand, within CA264_02725

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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625,654 + CA264_02710 0.31 +0.1
625,654 + CA264_02710 0.31 -0.5
625,654 + CA264_02710 0.31 -1.7
625,655 - CA264_02710 0.31 +1.1
625,657 + CA264_02710 0.31 +0.1
625,657 + CA264_02710 0.31 -0.3
625,658 - CA264_02710 0.31 -1.2
625,659 + CA264_02710 0.31 -0.8
625,659 + CA264_02710 0.31 +0.7
625,659 + CA264_02710 0.31 -0.3
625,659 + CA264_02710 0.31 -0.5
625,660 - CA264_02710 0.31 -0.4
625,660 - CA264_02710 0.31 -0.6
625,660 - CA264_02710 0.31 -0.2
625,660 - CA264_02710 0.31 -0.2
625,660 - CA264_02710 0.31 +0.2
625,660 - CA264_02710 0.31 -0.7
625,660 - CA264_02710 0.31 -0.6
625,691 - CA264_02710 0.34 -0.4
625,701 - CA264_02710 0.34 -1.2
625,701 - CA264_02710 0.34 -0.3
625,701 - CA264_02710 0.34 -1.9
625,701 - CA264_02710 0.34 -0.7
625,701 - CA264_02710 0.34 -1.1
625,703 + CA264_02710 0.35 -0.1
625,753 - CA264_02710 0.38 -0.7
625,782 - CA264_02710 0.40 -0.9
625,783 + CA264_02710 0.40 -0.3
625,901 - CA264_02710 0.49 -0.7
625,903 + CA264_02710 0.49 -0.9
625,904 - CA264_02710 0.49 +0.4
625,904 - CA264_02710 0.49 +0.1
626,011 + CA264_02710 0.57 -1.3
626,060 + CA264_02710 0.60 -0.5
626,103 + CA264_02710 0.64 -1.7
626,103 + CA264_02710 0.64 +0.4
626,104 - CA264_02710 0.64 -0.2
626,182 + CA264_02710 0.69 -0.4
626,183 - CA264_02710 0.69 -0.9
626,186 - CA264_02710 0.70 -0.2
626,199 + CA264_02710 0.71 -1.1
626,199 + CA264_02710 0.71 +0.9
626,260 + CA264_02710 0.75 +0.7
626,260 + CA264_02710 0.75 -0.3
626,278 + CA264_02710 0.76 -0.4
626,279 - CA264_02710 0.76 +2.9
626,286 + CA264_02710 0.77 +0.8
626,329 + CA264_02710 0.80 -0.8
626,330 - CA264_02710 0.80 +0.1
626,330 - CA264_02710 0.80 -0.2
626,429 - CA264_02710 0.87 +0.2
626,456 - CA264_02710 0.89 -1.1
626,497 + +1.8
626,512 + -0.3
626,513 - +0.0
626,542 + +1.0
626,628 + -0.9
626,632 + -0.5
626,632 + -0.1
626,632 + -0.8
626,633 - +0.3
626,633 - -0.4
626,636 + -0.5
626,637 - -1.9
626,637 - +0.3
626,654 - -0.4
626,655 + -1.8
626,678 + -0.3
626,874 + CA264_02715 0.37 -1.2
626,874 + CA264_02715 0.37 -0.5
626,875 - CA264_02715 0.37 -0.5
626,969 + CA264_02715 0.50 +0.1
627,014 + CA264_02715 0.57 -0.4
627,100 - CA264_02715 0.69 +0.4
627,210 - CA264_02715 0.85 -0.8
627,283 - +0.6
627,302 + -0.5
627,313 + -0.8
627,314 - -1.3
627,323 - -0.7
627,341 + -1.2
627,364 - -1.4
627,403 - -0.6
627,420 + -0.5
627,440 + -0.7
627,449 + +1.8
627,581 + CA264_02720 0.23 +0.7
627,587 + CA264_02720 0.25 +1.0
627,592 + CA264_02720 0.26 +0.5
627,593 - CA264_02720 0.26 +0.6
627,644 + CA264_02720 0.36 +0.2
627,679 - CA264_02720 0.43 +0.6
627,679 - CA264_02720 0.43 +0.6
627,728 + CA264_02720 0.53 +1.7
627,728 + CA264_02720 0.53 +0.8
627,728 + CA264_02720 0.53 +0.6
627,751 + CA264_02720 0.58 +1.3
627,758 - CA264_02720 0.60 +1.4
627,793 + CA264_02720 0.67 -0.2
627,827 + CA264_02720 0.74 +0.1
627,827 + CA264_02720 0.74 +0.4
627,828 - CA264_02720 0.74 +0.3
627,828 - CA264_02720 0.74 +1.0
627,828 - CA264_02720 0.74 +0.3
627,832 + CA264_02720 0.75 +0.5
627,832 + CA264_02720 0.75 +0.8
627,833 - CA264_02720 0.75 +2.0
627,858 - CA264_02720 0.80 +0.6
627,858 - CA264_02720 0.80 +0.5
627,865 + CA264_02720 0.81 -0.3
627,894 + CA264_02720 0.87 +1.6
627,895 - CA264_02720 0.88 +1.2
627,951 + -0.0
627,959 - +0.3
627,996 + -1.2
627,997 - -0.3
628,067 - -0.2
628,067 - -0.1
628,089 - CA264_02725 0.12 +0.5
628,089 - CA264_02725 0.12 -0.4
628,104 + CA264_02725 0.15 -1.3
628,105 - CA264_02725 0.15 +0.7
628,105 - CA264_02725 0.15 -0.7
628,142 - CA264_02725 0.22 -0.4
628,142 - CA264_02725 0.22 +0.5
628,153 + CA264_02725 0.23 +0.5
628,153 + CA264_02725 0.23 +0.3
628,154 - CA264_02725 0.24 +0.9
628,200 + CA264_02725 0.32 +0.3
628,201 - CA264_02725 0.32 +0.4

Or see this region's nucleotide sequence