Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02665

Experiment: m.b. Fusidic 0.0005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02655 and CA264_02660 are separated by 68 nucleotidesCA264_02660 and CA264_02665 are separated by 40 nucleotidesCA264_02665 and CA264_02670 are separated by 138 nucleotides CA264_02655: CA264_02655 - hypothetical protein, at 615,649 to 616,494 _02655 CA264_02660: CA264_02660 - hypothetical protein, at 616,563 to 617,108 _02660 CA264_02665: CA264_02665 - hypothetical protein, at 617,149 to 617,370 _02665 CA264_02670: CA264_02670 - hypothetical protein, at 617,509 to 618,273 _02670 Position (kb) 617 618Strain fitness (log2 ratio) -2 -1 0 1 2at 616.154 kb on + strand, within CA264_02655at 616.238 kb on - strand, within CA264_02655at 616.315 kb on - strand, within CA264_02655at 616.369 kb on + strand, within CA264_02655at 616.370 kb on - strand, within CA264_02655at 616.450 kb on - strandat 616.532 kb on - strandat 616.532 kb on - strandat 616.619 kb on - strand, within CA264_02660at 616.668 kb on + strand, within CA264_02660at 616.685 kb on + strand, within CA264_02660at 616.686 kb on - strand, within CA264_02660at 616.686 kb on - strand, within CA264_02660at 616.759 kb on + strand, within CA264_02660at 616.789 kb on + strand, within CA264_02660at 616.845 kb on + strand, within CA264_02660at 616.845 kb on + strand, within CA264_02660at 616.846 kb on - strand, within CA264_02660at 616.846 kb on - strand, within CA264_02660at 616.848 kb on + strand, within CA264_02660at 616.848 kb on + strand, within CA264_02660at 616.849 kb on - strand, within CA264_02660at 616.900 kb on - strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.903 kb on - strand, within CA264_02660at 616.976 kb on + strand, within CA264_02660at 616.977 kb on - strand, within CA264_02660at 616.981 kb on + strand, within CA264_02660at 617.008 kb on + strand, within CA264_02660at 617.008 kb on + strand, within CA264_02660at 617.009 kb on - strand, within CA264_02660at 617.009 kb on - strand, within CA264_02660at 617.016 kb on + strand, within CA264_02660at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.190 kb on - strand, within CA264_02665at 617.229 kb on + strand, within CA264_02665at 617.230 kb on - strand, within CA264_02665at 617.294 kb on - strand, within CA264_02665at 617.301 kb on + strand, within CA264_02665at 617.406 kb on - strandat 617.424 kb on + strandat 617.426 kb on + strandat 617.461 kb on + strandat 617.498 kb on + strandat 617.503 kb on + strandat 617.503 kb on + strandat 617.504 kb on - strandat 617.504 kb on - strandat 617.504 kb on - strandat 617.519 kb on + strandat 617.715 kb on + strand, within CA264_02670at 617.716 kb on - strand, within CA264_02670at 617.738 kb on + strand, within CA264_02670at 617.738 kb on + strand, within CA264_02670at 617.739 kb on - strand, within CA264_02670at 617.768 kb on - strand, within CA264_02670at 617.855 kb on + strand, within CA264_02670at 617.856 kb on - strand, within CA264_02670at 617.856 kb on - strand, within CA264_02670at 617.965 kb on - strand, within CA264_02670at 618.130 kb on + strand, within CA264_02670at 618.250 kb on + strandat 618.250 kb on + strandat 618.251 kb on - strandat 618.361 kb on + strandat 618.361 kb on + strandat 618.362 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
remove
616,154 + CA264_02655 0.60 -0.9
616,238 - CA264_02655 0.70 -0.2
616,315 - CA264_02655 0.79 +0.6
616,369 + CA264_02655 0.85 +0.2
616,370 - CA264_02655 0.85 -0.7
616,450 - -0.5
616,532 - -0.5
616,532 - -0.5
616,619 - CA264_02660 0.10 -0.5
616,668 + CA264_02660 0.19 -1.0
616,685 + CA264_02660 0.22 +1.2
616,686 - CA264_02660 0.23 +0.1
616,686 - CA264_02660 0.23 -1.1
616,759 + CA264_02660 0.36 -0.5
616,789 + CA264_02660 0.41 -1.0
616,845 + CA264_02660 0.52 +2.1
616,845 + CA264_02660 0.52 +1.3
616,846 - CA264_02660 0.52 -0.7
616,846 - CA264_02660 0.52 +1.5
616,848 + CA264_02660 0.52 +1.0
616,848 + CA264_02660 0.52 +1.5
616,849 - CA264_02660 0.52 -0.6
616,900 - CA264_02660 0.62 +0.2
616,902 + CA264_02660 0.62 +0.4
616,902 + CA264_02660 0.62 -0.9
616,902 + CA264_02660 0.62 +0.5
616,903 - CA264_02660 0.62 +0.1
616,976 + CA264_02660 0.76 -0.0
616,977 - CA264_02660 0.76 +1.2
616,981 + CA264_02660 0.77 -0.5
617,008 + CA264_02660 0.82 +0.4
617,008 + CA264_02660 0.82 +0.9
617,009 - CA264_02660 0.82 +0.3
617,009 - CA264_02660 0.82 +0.0
617,016 + CA264_02660 0.83 -0.4
617,189 + CA264_02665 0.18 -0.1
617,189 + CA264_02665 0.18 -0.4
617,189 + CA264_02665 0.18 +1.0
617,189 + CA264_02665 0.18 -0.4
617,190 - CA264_02665 0.18 +0.9
617,229 + CA264_02665 0.36 -0.3
617,230 - CA264_02665 0.36 +0.2
617,294 - CA264_02665 0.65 +0.3
617,301 + CA264_02665 0.68 +1.0
617,406 - -0.2
617,424 + +0.3
617,426 + -0.6
617,461 + -0.4
617,498 + +0.7
617,503 + +0.0
617,503 + -0.2
617,504 - -0.8
617,504 - -2.1
617,504 - -0.1
617,519 + +0.9
617,715 + CA264_02670 0.27 +0.1
617,716 - CA264_02670 0.27 -0.9
617,738 + CA264_02670 0.30 -0.5
617,738 + CA264_02670 0.30 -0.5
617,739 - CA264_02670 0.30 +0.5
617,768 - CA264_02670 0.34 +1.1
617,855 + CA264_02670 0.45 -0.0
617,856 - CA264_02670 0.45 +0.4
617,856 - CA264_02670 0.45 -0.2
617,965 - CA264_02670 0.60 -0.6
618,130 + CA264_02670 0.81 -0.8
618,250 + -0.2
618,250 + -0.3
618,251 - -0.8
618,361 + +0.1
618,361 + -1.3
618,362 - -0.4

Or see this region's nucleotide sequence