Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01835

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01830 and CA264_01835 are separated by 126 nucleotidesCA264_01835 and CA264_01840 are separated by 240 nucleotides CA264_01830: CA264_01830 - Bcr/CflA family drug resistance efflux transporter, at 428,596 to 429,846 _01830 CA264_01835: CA264_01835 - GNAT family N-acetyltransferase, at 429,973 to 430,422 _01835 CA264_01840: CA264_01840 - pyridine nucleotide-disulfide oxidoreductase, at 430,663 to 431,721 _01840 Position (kb) 429 430 431Strain fitness (log2 ratio) -2 -1 0 1 2at 429.006 kb on + strand, within CA264_01830at 429.059 kb on + strand, within CA264_01830at 429.059 kb on + strand, within CA264_01830at 429.090 kb on + strand, within CA264_01830at 429.090 kb on + strand, within CA264_01830at 429.091 kb on - strand, within CA264_01830at 429.095 kb on + strand, within CA264_01830at 429.105 kb on + strand, within CA264_01830at 429.106 kb on - strand, within CA264_01830at 429.242 kb on - strand, within CA264_01830at 429.341 kb on - strand, within CA264_01830at 429.393 kb on + strand, within CA264_01830at 429.393 kb on + strand, within CA264_01830at 429.393 kb on + strand, within CA264_01830at 429.393 kb on + strand, within CA264_01830at 429.415 kb on + strand, within CA264_01830at 429.416 kb on - strand, within CA264_01830at 429.417 kb on + strand, within CA264_01830at 429.418 kb on - strand, within CA264_01830at 429.490 kb on + strand, within CA264_01830at 429.491 kb on - strand, within CA264_01830at 429.494 kb on - strand, within CA264_01830at 429.511 kb on + strand, within CA264_01830at 429.512 kb on - strand, within CA264_01830at 429.696 kb on + strand, within CA264_01830at 429.697 kb on - strand, within CA264_01830at 429.712 kb on - strand, within CA264_01830at 429.735 kb on + strandat 429.811 kb on - strandat 429.825 kb on - strandat 429.844 kb on + strandat 429.845 kb on - strandat 429.876 kb on - strandat 429.992 kb on - strandat 430.034 kb on - strand, within CA264_01835at 430.211 kb on + strand, within CA264_01835at 430.265 kb on + strand, within CA264_01835at 430.266 kb on - strand, within CA264_01835at 430.267 kb on + strand, within CA264_01835at 430.267 kb on + strand, within CA264_01835at 430.383 kb on + strandat 430.493 kb on - strandat 430.523 kb on + strandat 430.567 kb on - strandat 430.632 kb on + strandat 430.632 kb on + strandat 430.633 kb on - strandat 430.664 kb on + strandat 430.675 kb on + strandat 430.675 kb on + strandat 430.675 kb on + strandat 430.676 kb on - strandat 430.734 kb on + strandat 430.769 kb on - strand, within CA264_01840at 430.881 kb on + strand, within CA264_01840at 430.943 kb on + strand, within CA264_01840at 430.943 kb on + strand, within CA264_01840at 430.944 kb on - strand, within CA264_01840at 431.019 kb on + strand, within CA264_01840at 431.020 kb on - strand, within CA264_01840at 431.033 kb on + strand, within CA264_01840at 431.034 kb on - strand, within CA264_01840at 431.034 kb on - strand, within CA264_01840at 431.047 kb on + strand, within CA264_01840at 431.072 kb on + strand, within CA264_01840at 431.075 kb on + strand, within CA264_01840at 431.076 kb on - strand, within CA264_01840at 431.089 kb on + strand, within CA264_01840at 431.099 kb on - strand, within CA264_01840at 431.149 kb on + strand, within CA264_01840at 431.150 kb on - strand, within CA264_01840at 431.215 kb on + strand, within CA264_01840at 431.216 kb on - strand, within CA264_01840at 431.219 kb on - strand, within CA264_01840at 431.259 kb on - strand, within CA264_01840at 431.289 kb on - strand, within CA264_01840at 431.307 kb on - strand, within CA264_01840at 431.318 kb on + strand, within CA264_01840at 431.319 kb on - strand, within CA264_01840at 431.329 kb on + strand, within CA264_01840at 431.329 kb on + strand, within CA264_01840at 431.330 kb on - strand, within CA264_01840at 431.363 kb on + strand, within CA264_01840at 431.363 kb on + strand, within CA264_01840at 431.364 kb on - strand, within CA264_01840at 431.366 kb on + strand, within CA264_01840at 431.366 kb on + strand, within CA264_01840at 431.367 kb on - strand, within CA264_01840

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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429,006 + CA264_01830 0.33 +0.1
429,059 + CA264_01830 0.37 -0.9
429,059 + CA264_01830 0.37 +0.7
429,090 + CA264_01830 0.39 +2.0
429,090 + CA264_01830 0.39 +0.2
429,091 - CA264_01830 0.40 -1.4
429,095 + CA264_01830 0.40 +0.4
429,105 + CA264_01830 0.41 +0.1
429,106 - CA264_01830 0.41 -0.5
429,242 - CA264_01830 0.52 -0.9
429,341 - CA264_01830 0.60 +0.3
429,393 + CA264_01830 0.64 -0.7
429,393 + CA264_01830 0.64 +0.9
429,393 + CA264_01830 0.64 +0.9
429,393 + CA264_01830 0.64 +0.7
429,415 + CA264_01830 0.65 -0.1
429,416 - CA264_01830 0.66 -0.4
429,417 + CA264_01830 0.66 -0.2
429,418 - CA264_01830 0.66 +0.8
429,490 + CA264_01830 0.71 -1.3
429,491 - CA264_01830 0.72 -0.0
429,494 - CA264_01830 0.72 -0.7
429,511 + CA264_01830 0.73 +0.0
429,512 - CA264_01830 0.73 +0.4
429,696 + CA264_01830 0.88 +0.2
429,697 - CA264_01830 0.88 -0.0
429,712 - CA264_01830 0.89 -0.8
429,735 + -0.1
429,811 - -0.3
429,825 - -0.1
429,844 + -0.7
429,845 - +1.6
429,876 - +0.3
429,992 - -0.3
430,034 - CA264_01835 0.14 +0.3
430,211 + CA264_01835 0.53 +0.4
430,265 + CA264_01835 0.65 +0.3
430,266 - CA264_01835 0.65 -0.7
430,267 + CA264_01835 0.65 -0.7
430,267 + CA264_01835 0.65 -1.1
430,383 + -0.3
430,493 - +0.1
430,523 + -0.1
430,567 - -0.1
430,632 + -0.1
430,632 + +0.7
430,633 - -0.7
430,664 + +0.6
430,675 + +0.1
430,675 + -0.8
430,675 + -0.4
430,676 - -0.3
430,734 + -0.3
430,769 - CA264_01840 0.10 -0.5
430,881 + CA264_01840 0.21 -1.0
430,943 + CA264_01840 0.26 +0.4
430,943 + CA264_01840 0.26 +0.3
430,944 - CA264_01840 0.27 -0.4
431,019 + CA264_01840 0.34 +0.2
431,020 - CA264_01840 0.34 -0.3
431,033 + CA264_01840 0.35 -2.0
431,034 - CA264_01840 0.35 -0.1
431,034 - CA264_01840 0.35 -0.2
431,047 + CA264_01840 0.36 +0.9
431,072 + CA264_01840 0.39 +0.0
431,075 + CA264_01840 0.39 -0.0
431,076 - CA264_01840 0.39 +0.0
431,089 + CA264_01840 0.40 -0.4
431,099 - CA264_01840 0.41 +0.7
431,149 + CA264_01840 0.46 -0.2
431,150 - CA264_01840 0.46 +0.9
431,215 + CA264_01840 0.52 -0.4
431,216 - CA264_01840 0.52 -1.3
431,219 - CA264_01840 0.53 -0.5
431,259 - CA264_01840 0.56 +0.1
431,289 - CA264_01840 0.59 -0.4
431,307 - CA264_01840 0.61 +1.2
431,318 + CA264_01840 0.62 +1.3
431,319 - CA264_01840 0.62 +0.1
431,329 + CA264_01840 0.63 -0.3
431,329 + CA264_01840 0.63 +0.6
431,330 - CA264_01840 0.63 +0.9
431,363 + CA264_01840 0.66 -0.3
431,363 + CA264_01840 0.66 -0.9
431,364 - CA264_01840 0.66 -0.6
431,366 + CA264_01840 0.66 +0.3
431,366 + CA264_01840 0.66 +0.1
431,367 - CA264_01840 0.66 +1.3

Or see this region's nucleotide sequence