Experiment: m.b. Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01020 and CA264_01025 are separated by 180 nucleotides CA264_01025 and CA264_01030 are separated by 420 nucleotides
CA264_01020: CA264_01020 - hypothetical protein, at 222,700 to 223,734
_01020
CA264_01025: CA264_01025 - hypothetical protein, at 223,915 to 224,742
_01025
CA264_01030: CA264_01030 - T9SS C-terminal target domain-containing protein, at 225,163 to 227,577
_01030
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1
2 at 223.063 kb on - strand, within CA264_01020 at 223.063 kb on - strand, within CA264_01020 at 223.090 kb on - strand, within CA264_01020 at 223.144 kb on + strand, within CA264_01020 at 223.174 kb on + strand, within CA264_01020 at 223.232 kb on - strand, within CA264_01020 at 223.232 kb on - strand, within CA264_01020 at 223.347 kb on + strand, within CA264_01020 at 223.348 kb on - strand, within CA264_01020 at 223.348 kb on - strand, within CA264_01020 at 223.523 kb on + strand, within CA264_01020 at 223.528 kb on + strand, within CA264_01020 at 223.529 kb on - strand, within CA264_01020 at 223.626 kb on - strand, within CA264_01020 at 223.644 kb on + strand at 223.651 kb on + strand at 223.652 kb on - strand at 223.652 kb on - strand at 223.661 kb on + strand at 223.673 kb on + strand at 223.673 kb on + strand at 223.705 kb on - strand at 223.718 kb on + strand at 223.726 kb on + strand at 223.727 kb on - strand at 223.752 kb on + strand at 223.762 kb on + strand at 223.762 kb on + strand at 223.763 kb on + strand at 223.801 kb on + strand at 223.811 kb on - strand at 223.836 kb on - strand at 223.836 kb on - strand at 223.838 kb on + strand at 223.838 kb on + strand at 223.839 kb on - strand at 223.916 kb on + strand at 223.917 kb on - strand at 223.920 kb on - strand at 224.633 kb on - strand, within CA264_01025 at 224.643 kb on + strand, within CA264_01025 at 224.663 kb on + strand at 224.675 kb on - strand at 224.680 kb on - strand at 224.680 kb on - strand at 224.697 kb on + strand at 224.697 kb on + strand at 224.698 kb on - strand at 224.698 kb on - strand at 224.701 kb on + strand at 224.701 kb on + strand at 224.721 kb on + strand at 224.742 kb on + strand at 224.742 kb on + strand at 224.742 kb on + strand at 224.743 kb on - strand at 224.743 kb on - strand at 224.743 kb on - strand at 224.760 kb on + strand at 224.771 kb on - strand at 224.771 kb on - strand at 224.771 kb on - strand at 224.771 kb on - strand at 224.771 kb on - strand at 224.771 kb on - strand at 224.774 kb on + strand at 224.774 kb on + strand at 224.774 kb on + strand at 224.775 kb on - strand at 224.775 kb on - strand at 224.844 kb on - strand at 224.897 kb on + strand at 224.897 kb on + strand at 224.898 kb on - strand at 224.898 kb on - strand at 224.930 kb on + strand at 224.930 kb on + strand at 224.930 kb on + strand at 224.931 kb on - strand at 224.938 kb on + strand at 224.958 kb on + strand at 225.070 kb on - strand at 225.072 kb on + strand at 225.079 kb on + strand at 225.080 kb on - strand at 225.099 kb on + strand at 225.100 kb on - strand at 225.149 kb on + strand at 225.225 kb on - strand at 225.266 kb on + strand at 225.267 kb on - strand at 225.267 kb on - strand at 225.267 kb on - strand at 225.267 kb on - strand at 225.268 kb on + strand at 225.269 kb on - strand at 225.269 kb on - strand at 225.344 kb on + strand at 225.404 kb on + strand at 225.528 kb on - strand, within CA264_01030 at 225.528 kb on - strand, within CA264_01030 at 225.535 kb on + strand, within CA264_01030 at 225.535 kb on + strand, within CA264_01030 at 225.536 kb on - strand, within CA264_01030 at 225.536 kb on - strand, within CA264_01030 at 225.536 kb on - strand, within CA264_01030 at 225.601 kb on - strand, within CA264_01030 at 225.601 kb on - strand, within CA264_01030 at 225.603 kb on + strand, within CA264_01030 at 225.604 kb on - strand, within CA264_01030
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml remove 223,063 - CA264_01020 0.35 +0.4 223,063 - CA264_01020 0.35 -1.2 223,090 - CA264_01020 0.38 +0.1 223,144 + CA264_01020 0.43 -0.6 223,174 + CA264_01020 0.46 +0.9 223,232 - CA264_01020 0.51 -0.6 223,232 - CA264_01020 0.51 -0.7 223,347 + CA264_01020 0.63 -0.4 223,348 - CA264_01020 0.63 -0.1 223,348 - CA264_01020 0.63 -1.2 223,523 + CA264_01020 0.80 +0.2 223,528 + CA264_01020 0.80 +0.4 223,529 - CA264_01020 0.80 -0.7 223,626 - CA264_01020 0.89 +0.6 223,644 + -0.1 223,651 + +1.8 223,652 - +0.3 223,652 - -0.0 223,661 + +0.2 223,673 + -0.7 223,673 + -0.2 223,705 - +0.8 223,718 + -0.4 223,726 + -0.3 223,727 - -0.2 223,752 + -0.3 223,762 + -0.4 223,762 + -0.6 223,763 + +0.1 223,801 + -0.5 223,811 - +0.3 223,836 - +0.1 223,836 - +0.0 223,838 + +0.1 223,838 + -0.9 223,839 - +0.6 223,916 + -0.3 223,917 - +2.3 223,920 - -0.7 224,633 - CA264_01025 0.87 -0.6 224,643 + CA264_01025 0.88 -1.3 224,663 + -0.8 224,675 - -0.7 224,680 - -0.0 224,680 - +0.0 224,697 + +1.7 224,697 + +1.4 224,698 - -0.1 224,698 - +0.7 224,701 + +0.5 224,701 + -0.4 224,721 + -0.0 224,742 + +0.1 224,742 + +0.1 224,742 + -0.4 224,743 - +1.1 224,743 - +0.1 224,743 - -0.2 224,760 + -0.0 224,771 - +0.1 224,771 - -0.4 224,771 - +1.2 224,771 - -0.0 224,771 - -0.2 224,771 - -0.4 224,774 + -0.0 224,774 + +1.3 224,774 + -0.5 224,775 - +1.1 224,775 - -0.0 224,844 - +1.9 224,897 + -0.5 224,897 + +0.1 224,898 - +0.8 224,898 - +0.2 224,930 + -0.4 224,930 + -0.1 224,930 + +0.2 224,931 - +0.7 224,938 + -0.5 224,958 + +0.6 225,070 - -0.2 225,072 + -0.9 225,079 + +0.8 225,080 - +0.2 225,099 + -0.1 225,100 - -0.5 225,149 + -0.5 225,225 - +0.1 225,266 + +1.3 225,267 - +2.4 225,267 - -0.3 225,267 - -0.0 225,267 - +0.0 225,268 + +0.1 225,269 - +0.3 225,269 - +0.1 225,344 + +0.5 225,404 + +0.3 225,528 - CA264_01030 0.15 -0.3 225,528 - CA264_01030 0.15 +0.5 225,535 + CA264_01030 0.15 -1.1 225,535 + CA264_01030 0.15 -0.1 225,536 - CA264_01030 0.15 +1.0 225,536 - CA264_01030 0.15 +0.3 225,536 - CA264_01030 0.15 -1.2 225,601 - CA264_01030 0.18 +0.3 225,601 - CA264_01030 0.18 -0.1 225,603 + CA264_01030 0.18 -0.6 225,604 - CA264_01030 0.18 +0.4
Or see this region's nucleotide sequence