Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5162 and Atu5163 overlap by 4 nucleotides Atu5163 and Atu5164 are separated by 2 nucleotides Atu5164 and Atu5165 are separated by 100 nucleotides Atu5165 and Atu5166 overlap by 1 nucleotides Atu5166 and Atu5167 are separated by 234 nucleotides
Atu5162: Atu5162 - type IV secretion protein AvhB1, at 160,508 to 161,194
Atu5162
Atu5163: Atu5163 - type IV secretion protein AvhB2, at 161,191 to 161,490
Atu5163
Atu5164: Atu5164 - type IV secretion protein AvhB3, at 161,493 to 161,834
Atu5164
Atu5165: Atu5165 - type IV secretion protein AvhB4, at 161,935 to 164,208
Atu5165
Atu5166: Atu5166 - type IV secretion protein AvhB5, at 164,208 to 164,906
Atu5166
Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076
Atu5167
Position (kb) 161
162
163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 160.968 kb on - strand, within Atu5162 at 161.128 kb on - strand at 161.129 kb on + strand at 161.208 kb on + strand at 161.399 kb on + strand, within Atu5163 at 161.404 kb on + strand, within Atu5163 at 161.404 kb on + strand, within Atu5163 at 161.412 kb on - strand, within Atu5163 at 161.484 kb on + strand at 161.618 kb on - strand, within Atu5164 at 161.843 kb on + strand at 161.924 kb on + strand at 161.980 kb on - strand at 162.077 kb on + strand at 162.077 kb on + strand at 162.085 kb on - strand at 162.280 kb on - strand, within Atu5165 at 162.344 kb on + strand, within Atu5165 at 162.392 kb on + strand, within Atu5165 at 162.392 kb on + strand, within Atu5165 at 162.417 kb on - strand, within Atu5165 at 162.607 kb on + strand, within Atu5165 at 162.607 kb on + strand, within Atu5165 at 162.607 kb on + strand, within Atu5165 at 162.615 kb on - strand, within Atu5165 at 162.842 kb on - strand, within Atu5165 at 162.858 kb on + strand, within Atu5165 at 162.876 kb on - strand, within Atu5165 at 162.978 kb on - strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.092 kb on + strand, within Atu5165 at 163.253 kb on - strand, within Atu5165 at 163.253 kb on - strand, within Atu5165 at 163.284 kb on + strand, within Atu5165 at 163.374 kb on + strand, within Atu5165 at 163.390 kb on - strand, within Atu5165 at 163.472 kb on + strand, within Atu5165 at 163.551 kb on - strand, within Atu5165 at 163.551 kb on - strand, within Atu5165 at 163.613 kb on + strand, within Atu5165 at 163.621 kb on - strand, within Atu5165 at 163.631 kb on + strand, within Atu5165 at 163.675 kb on + strand, within Atu5165 at 163.678 kb on + strand, within Atu5165 at 163.690 kb on + strand, within Atu5165 at 163.802 kb on - strand, within Atu5165 at 163.861 kb on + strand, within Atu5165 at 163.909 kb on - strand, within Atu5165 at 164.038 kb on + strand at 164.125 kb on - strand at 164.156 kb on - strand at 164.171 kb on + strand at 164.237 kb on + strand at 164.245 kb on - strand at 164.249 kb on + strand at 164.321 kb on + strand, within Atu5166 at 164.339 kb on + strand, within Atu5166 at 164.439 kb on + strand, within Atu5166 at 164.664 kb on + strand, within Atu5166 at 164.672 kb on - strand, within Atu5166 at 164.735 kb on - strand, within Atu5166 at 164.807 kb on + strand, within Atu5166 at 164.826 kb on + strand, within Atu5166 at 164.903 kb on + strand at 164.903 kb on + strand at 164.915 kb on - strand at 164.946 kb on - strand at 164.970 kb on + strand at 165.090 kb on + strand at 165.122 kb on + strand at 165.150 kb on + strand at 165.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 160,968 - Atu5162 0.67 -0.1 161,128 - +0.5 161,129 + -0.2 161,208 + +1.7 161,399 + Atu5163 0.69 +1.1 161,404 + Atu5163 0.71 +0.3 161,404 + Atu5163 0.71 -0.5 161,412 - Atu5163 0.74 +0.5 161,484 + +2.1 161,618 - Atu5164 0.37 -1.5 161,843 + -1.0 161,924 + -0.2 161,980 - +1.3 162,077 + +1.7 162,077 + -0.8 162,085 - +0.1 162,280 - Atu5165 0.15 +0.8 162,344 + Atu5165 0.18 +0.0 162,392 + Atu5165 0.20 +2.4 162,392 + Atu5165 0.20 +0.1 162,417 - Atu5165 0.21 +2.5 162,607 + Atu5165 0.30 +0.1 162,607 + Atu5165 0.30 -0.1 162,607 + Atu5165 0.30 +3.1 162,615 - Atu5165 0.30 +0.1 162,842 - Atu5165 0.40 +0.2 162,858 + Atu5165 0.41 +0.3 162,876 - Atu5165 0.41 -1.3 162,978 - Atu5165 0.46 +1.4 163,068 + Atu5165 0.50 +2.2 163,068 + Atu5165 0.50 +0.6 163,068 + Atu5165 0.50 +0.3 163,068 + Atu5165 0.50 +1.0 163,068 + Atu5165 0.50 -0.6 163,068 + Atu5165 0.50 +0.2 163,092 + Atu5165 0.51 +0.7 163,253 - Atu5165 0.58 +1.2 163,253 - Atu5165 0.58 +0.3 163,284 + Atu5165 0.59 +0.7 163,374 + Atu5165 0.63 +0.3 163,390 - Atu5165 0.64 +0.3 163,472 + Atu5165 0.68 +0.4 163,551 - Atu5165 0.71 +0.1 163,551 - Atu5165 0.71 +0.6 163,613 + Atu5165 0.74 -0.0 163,621 - Atu5165 0.74 +0.2 163,631 + Atu5165 0.75 +2.3 163,675 + Atu5165 0.77 +0.7 163,678 + Atu5165 0.77 -1.3 163,690 + Atu5165 0.77 -2.4 163,802 - Atu5165 0.82 -0.6 163,861 + Atu5165 0.85 -0.1 163,909 - Atu5165 0.87 +0.7 164,038 + -0.0 164,125 - +0.5 164,156 - -0.8 164,171 + -0.9 164,237 + +0.1 164,245 - +0.5 164,249 + +0.7 164,321 + Atu5166 0.16 -0.1 164,339 + Atu5166 0.19 +0.4 164,439 + Atu5166 0.33 -1.0 164,664 + Atu5166 0.65 +0.4 164,672 - Atu5166 0.66 -0.7 164,735 - Atu5166 0.75 -0.2 164,807 + Atu5166 0.86 -1.4 164,826 + Atu5166 0.88 +0.7 164,903 + +0.4 164,903 + -1.3 164,915 - -0.0 164,946 - -0.0 164,970 + +0.7 165,090 + -0.7 165,122 + +1.0 165,150 + +1.2 165,173 + +0.1
Or see this region's nucleotide sequence