Strain Fitness in Pseudomonas simiae WCS417 around PS417_04495

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04490 and PS417_04495 are separated by 133 nucleotidesPS417_04495 and PS417_04500 are separated by 11 nucleotidesPS417_04500 and PS417_04505 are separated by 36 nucleotides PS417_04490: PS417_04490 - glycerol acyltransferase, at 992,799 to 993,962 _04490 PS417_04495: PS417_04495 - LITAF-like zinc ribbon domain containing protein, at 994,096 to 994,278 _04495 PS417_04500: PS417_04500 - hypothetical protein, at 994,290 to 994,550 _04500 PS417_04505: PS417_04505 - hypothetical protein, at 994,587 to 995,207 _04505 Position (kb) 994 995Strain fitness (log2 ratio) -2 -1 0 1 2at 993.977 kb on - strandat 993.977 kb on - strandat 993.992 kb on - strandat 994.005 kb on - strandat 994.005 kb on - strandat 994.024 kb on - strandat 994.024 kb on - strandat 994.042 kb on - strandat 994.042 kb on - strandat 994.052 kb on - strandat 994.056 kb on - strandat 994.056 kb on - strandat 994.070 kb on - strandat 994.070 kb on - strandat 994.070 kb on - strandat 994.115 kb on - strand, within PS417_04495at 994.115 kb on - strand, within PS417_04495at 994.115 kb on - strand, within PS417_04495at 994.115 kb on - strand, within PS417_04495at 994.127 kb on - strand, within PS417_04495at 994.180 kb on + strand, within PS417_04495at 994.180 kb on + strand, within PS417_04495at 994.180 kb on + strand, within PS417_04495at 994.180 kb on + strand, within PS417_04495at 994.180 kb on + strand, within PS417_04495at 994.181 kb on - strand, within PS417_04495at 994.181 kb on - strand, within PS417_04495at 994.181 kb on - strand, within PS417_04495at 994.181 kb on - strand, within PS417_04495at 994.181 kb on - strand, within PS417_04495at 994.181 kb on - strand, within PS417_04495at 994.181 kb on - strand, within PS417_04495at 994.182 kb on + strand, within PS417_04495at 994.183 kb on - strand, within PS417_04495at 994.183 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.185 kb on - strand, within PS417_04495at 994.284 kb on - strandat 994.284 kb on - strandat 994.284 kb on - strandat 994.303 kb on - strandat 994.485 kb on + strand, within PS417_04500at 994.485 kb on + strand, within PS417_04500at 994.548 kb on + strandat 994.549 kb on - strandat 995.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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993,977 - -0.0
993,977 - +1.2
993,992 - +0.2
994,005 - -1.2
994,005 - +0.2
994,024 - -0.8
994,024 - -1.0
994,042 - -1.6
994,042 - -1.1
994,052 - -0.4
994,056 - +0.0
994,056 - -0.7
994,070 - -1.6
994,070 - -2.2
994,070 - -2.0
994,115 - PS417_04495 0.10 -2.3
994,115 - PS417_04495 0.10 -0.9
994,115 - PS417_04495 0.10 -1.7
994,115 - PS417_04495 0.10 -1.3
994,127 - PS417_04495 0.17 -2.2
994,180 + PS417_04495 0.46 +1.7
994,180 + PS417_04495 0.46 +1.2
994,180 + PS417_04495 0.46 +1.3
994,180 + PS417_04495 0.46 +1.2
994,180 + PS417_04495 0.46 +0.4
994,181 - PS417_04495 0.46 -1.9
994,181 - PS417_04495 0.46 -1.3
994,181 - PS417_04495 0.46 -2.1
994,181 - PS417_04495 0.46 -1.2
994,181 - PS417_04495 0.46 -1.4
994,181 - PS417_04495 0.46 -1.8
994,181 - PS417_04495 0.46 -0.6
994,182 + PS417_04495 0.47 +1.9
994,183 - PS417_04495 0.48 +0.5
994,183 - PS417_04495 0.48 -1.6
994,185 - PS417_04495 0.49 -1.0
994,185 - PS417_04495 0.49 -1.5
994,185 - PS417_04495 0.49 -2.3
994,185 - PS417_04495 0.49 -2.2
994,185 - PS417_04495 0.49 -1.9
994,185 - PS417_04495 0.49 -1.7
994,185 - PS417_04495 0.49 -2.0
994,185 - PS417_04495 0.49 -0.8
994,185 - PS417_04495 0.49 +0.5
994,185 - PS417_04495 0.49 -1.1
994,284 - -2.4
994,284 - -2.4
994,284 - -2.5
994,303 - -1.0
994,485 + PS417_04500 0.75 -0.1
994,485 + PS417_04500 0.75 +0.8
994,548 + -0.2
994,549 - -0.0
995,272 + -0.3

Or see this region's nucleotide sequence