Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04295 and PS417_04300 are separated by 150 nucleotides PS417_04300 and PS417_04305 overlap by 8 nucleotides
PS417_04295: PS417_04295 - peptidase PmbA, at 963,706 to 965,052
_04295
PS417_04300: PS417_04300 - FagA protein, at 965,203 to 965,598
_04300
PS417_04305: PS417_04305 - aspartate ammonia-lyase, at 965,591 to 966,967
_04305
Position (kb) 965
966 Strain fitness (log2 ratio) -2
-1
0
1 at 964.213 kb on + strand, within PS417_04295 at 964.214 kb on - strand, within PS417_04295 at 964.243 kb on + strand, within PS417_04295 at 964.260 kb on + strand, within PS417_04295 at 964.312 kb on + strand, within PS417_04295 at 964.318 kb on + strand, within PS417_04295 at 964.319 kb on - strand, within PS417_04295 at 964.319 kb on - strand, within PS417_04295 at 964.608 kb on + strand, within PS417_04295 at 964.678 kb on + strand, within PS417_04295 at 964.678 kb on + strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.693 kb on + strand, within PS417_04295 at 964.693 kb on + strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.861 kb on + strand, within PS417_04295 at 964.862 kb on - strand, within PS417_04295 at 965.074 kb on + strand at 965.308 kb on + strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.596 kb on + strand at 965.596 kb on + strand at 965.596 kb on + strand at 965.597 kb on - strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.655 kb on - strand at 965.655 kb on - strand at 965.655 kb on - strand at 965.891 kb on - strand, within PS417_04305 at 966.225 kb on + strand, within PS417_04305
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 964,213 + PS417_04295 0.38 -0.2 964,214 - PS417_04295 0.38 +0.0 964,243 + PS417_04295 0.40 -0.1 964,260 + PS417_04295 0.41 +0.2 964,312 + PS417_04295 0.45 -1.2 964,318 + PS417_04295 0.45 -0.4 964,319 - PS417_04295 0.46 +0.1 964,319 - PS417_04295 0.46 +0.3 964,608 + PS417_04295 0.67 +1.0 964,678 + PS417_04295 0.72 +0.5 964,678 + PS417_04295 0.72 -0.1 964,679 - PS417_04295 0.72 -0.4 964,679 - PS417_04295 0.72 -0.4 964,679 - PS417_04295 0.72 +0.2 964,679 - PS417_04295 0.72 -0.0 964,693 + PS417_04295 0.73 +0.7 964,693 + PS417_04295 0.73 +0.1 964,694 - PS417_04295 0.73 +0.1 964,694 - PS417_04295 0.73 -0.0 964,694 - PS417_04295 0.73 +0.3 964,861 + PS417_04295 0.86 +1.5 964,862 - PS417_04295 0.86 +1.0 965,074 + +1.1 965,308 + PS417_04300 0.27 +0.6 965,309 - PS417_04300 0.27 -1.0 965,309 - PS417_04300 0.27 -0.3 965,309 - PS417_04300 0.27 -0.8 965,596 + -1.0 965,596 + -1.6 965,596 + -0.0 965,597 - -0.4 965,654 + +0.6 965,654 + -0.1 965,654 + -1.4 965,654 + -0.6 965,655 - -2.0 965,655 - +0.1 965,655 - -0.4 965,891 - PS417_04305 0.22 +0.3 966,225 + PS417_04305 0.46 +1.3
Or see this region's nucleotide sequence