Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26370 and PS417_26375 are separated by 69 nucleotides PS417_26375 and PS417_26380 are separated by 227 nucleotides
PS417_26370: PS417_26370 - RNA helicase, at 5,702,436 to 5,703,821
_26370
PS417_26375: PS417_26375 - membrane protein, at 5,703,891 to 5,705,069
_26375
PS417_26380: PS417_26380 - YccS/YhfK family integral membrane protein, at 5,705,297 to 5,707,480
_26380
Position (kb)
5703
5704
5705
5706 Strain fitness (log2 ratio)
-1
0
1 at 5702.934 kb on + strand, within PS417_26370 at 5703.148 kb on + strand, within PS417_26370 at 5703.149 kb on - strand, within PS417_26370 at 5703.820 kb on - strand at 5703.820 kb on - strand at 5703.834 kb on + strand at 5703.876 kb on + strand at 5703.877 kb on - strand at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand at 5704.052 kb on + strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.056 kb on + strand, within PS417_26375 at 5704.057 kb on - strand, within PS417_26375 at 5704.167 kb on + strand, within PS417_26375 at 5704.615 kb on + strand, within PS417_26375 at 5704.616 kb on - strand, within PS417_26375 at 5704.809 kb on + strand, within PS417_26375 at 5704.810 kb on - strand, within PS417_26375 at 5704.832 kb on + strand, within PS417_26375 at 5704.972 kb on - strand at 5705.061 kb on + strand at 5705.081 kb on - strand at 5705.357 kb on + strand at 5706.041 kb on + strand, within PS417_26380 at 5706.041 kb on + strand, within PS417_26380 at 5706.041 kb on + strand, within PS417_26380 at 5706.041 kb on + strand, within PS417_26380 at 5706.042 kb on - strand, within PS417_26380 at 5706.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 5,702,934 + PS417_26370 0.36 +0.3 5,703,148 + PS417_26370 0.51 +0.1 5,703,149 - PS417_26370 0.51 +1.2 5,703,820 - -0.2 5,703,820 - +0.4 5,703,834 + -0.5 5,703,876 + +0.7 5,703,877 - +0.2 5,704,052 + PS417_26375 0.14 -0.1 5,704,052 + PS417_26375 0.14 +0.4 5,704,052 + PS417_26375 0.14 +0.2 5,704,052 + +1.2 5,704,052 + PS417_26375 0.14 +0.7 5,704,053 - PS417_26375 0.14 +0.0 5,704,053 - PS417_26375 0.14 +0.6 5,704,053 - PS417_26375 0.14 +1.7 5,704,056 + PS417_26375 0.14 +1.0 5,704,057 - PS417_26375 0.14 +0.5 5,704,167 + PS417_26375 0.23 +0.0 5,704,615 + PS417_26375 0.61 +0.1 5,704,616 - PS417_26375 0.61 +0.4 5,704,809 + PS417_26375 0.78 +0.6 5,704,810 - PS417_26375 0.78 +0.8 5,704,832 + PS417_26375 0.80 +1.7 5,704,972 - +0.9 5,705,061 + -0.2 5,705,081 - -0.4 5,705,357 + +0.2 5,706,041 + PS417_26380 0.34 +0.2 5,706,041 + PS417_26380 0.34 -0.3 5,706,041 + PS417_26380 0.34 -0.4 5,706,041 + PS417_26380 0.34 -0.4 5,706,042 - PS417_26380 0.34 +0.7 5,706,042 - +0.6
Or see this region's nucleotide sequence