Strain Fitness in Pseudomonas simiae WCS417 around PS417_02555

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02535 and PS417_02540 are separated by 152 nucleotidesPS417_02540 and PS417_02545 are separated by 152 nucleotidesPS417_02545 and PS417_02550 are separated by 152 nucleotidesPS417_02550 and PS417_02555 are separated by 225 nucleotidesPS417_02555 and PS417_02560 overlap by 4 nucleotides PS417_02535: PS417_02535 - tRNA-Leu, at 580,923 to 581,009 _02535 PS417_02540: PS417_02540 - tRNA-Leu, at 581,162 to 581,248 _02540 PS417_02545: PS417_02545 - tRNA-Leu, at 581,401 to 581,487 _02545 PS417_02550: PS417_02550 - tRNA-Leu, at 581,640 to 581,726 _02550 PS417_02555: PS417_02555 - exoribonuclease R, at 581,952 to 584,579 _02555 PS417_02560: PS417_02560 - 23S rRNA methyltransferase, at 584,576 to 585,331 _02560 Position (kb) 581 582 583 584 585Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 581.765 kb on - strandat 581.767 kb on - strandat 581.781 kb on - strandat 581.867 kb on + strandat 581.868 kb on - strandat 581.909 kb on + strandat 581.919 kb on + strandat 581.919 kb on + strandat 581.930 kb on + strandat 581.931 kb on - strandat 581.931 kb on - strandat 581.931 kb on - strandat 581.931 kb on - strandat 581.931 kb on - strandat 582.171 kb on + strandat 582.171 kb on + strandat 582.171 kb on + strandat 582.171 kb on + strandat 582.171 kb on + strandat 582.172 kb on - strandat 582.172 kb on - strandat 582.172 kb on - strandat 582.189 kb on + strandat 582.189 kb on + strandat 582.398 kb on - strand, within PS417_02555at 582.429 kb on + strand, within PS417_02555at 582.429 kb on + strand, within PS417_02555at 582.509 kb on + strand, within PS417_02555at 582.612 kb on + strand, within PS417_02555at 582.612 kb on + strand, within PS417_02555at 582.612 kb on + strand, within PS417_02555at 582.612 kb on + strand, within PS417_02555at 582.612 kb on + strand, within PS417_02555at 582.613 kb on - strand, within PS417_02555at 582.613 kb on - strand, within PS417_02555at 582.613 kb on - strand, within PS417_02555at 582.613 kb on - strand, within PS417_02555at 582.654 kb on + strand, within PS417_02555at 582.654 kb on + strand, within PS417_02555at 582.654 kb on + strand, within PS417_02555at 582.654 kb on + strand, within PS417_02555at 582.654 kb on + strand, within PS417_02555at 582.655 kb on - strand, within PS417_02555at 582.655 kb on - strand, within PS417_02555at 582.895 kb on - strand, within PS417_02555at 582.935 kb on - strand, within PS417_02555at 582.951 kb on + strand, within PS417_02555at 582.951 kb on + strand, within PS417_02555at 583.092 kb on + strand, within PS417_02555at 583.092 kb on + strand, within PS417_02555at 583.128 kb on + strand, within PS417_02555at 583.194 kb on + strand, within PS417_02555at 583.194 kb on + strand, within PS417_02555at 583.194 kb on + strand, within PS417_02555at 583.216 kb on + strand, within PS417_02555at 583.217 kb on - strand, within PS417_02555at 583.217 kb on - strand, within PS417_02555at 583.237 kb on - strand, within PS417_02555at 583.399 kb on + strand, within PS417_02555at 583.443 kb on + strand, within PS417_02555at 583.443 kb on + strand, within PS417_02555at 583.444 kb on - strand, within PS417_02555at 583.444 kb on - strand, within PS417_02555at 583.444 kb on - strand, within PS417_02555at 583.641 kb on + strand, within PS417_02555at 583.686 kb on + strand, within PS417_02555at 583.686 kb on + strand, within PS417_02555at 583.687 kb on - strand, within PS417_02555at 583.687 kb on - strand, within PS417_02555at 583.687 kb on - strand, within PS417_02555at 583.687 kb on - strand, within PS417_02555at 583.697 kb on + strand, within PS417_02555at 583.697 kb on + strand, within PS417_02555at 583.697 kb on + strand, within PS417_02555at 583.697 kb on + strand, within PS417_02555at 583.698 kb on - strand, within PS417_02555at 583.698 kb on - strand, within PS417_02555at 583.824 kb on + strand, within PS417_02555at 583.830 kb on + strand, within PS417_02555at 584.019 kb on + strand, within PS417_02555at 584.019 kb on + strand, within PS417_02555at 584.019 kb on + strand, within PS417_02555at 584.019 kb on + strand, within PS417_02555at 584.019 kb on + strand, within PS417_02555at 584.020 kb on - strand, within PS417_02555at 584.061 kb on + strand, within PS417_02555at 584.061 kb on + strand, within PS417_02555at 584.061 kb on + strand, within PS417_02555at 584.062 kb on - strand, within PS417_02555at 584.064 kb on + strand, within PS417_02555at 584.065 kb on - strand, within PS417_02555at 584.065 kb on - strand, within PS417_02555at 584.441 kb on + strandat 584.496 kb on - strandat 584.610 kb on + strandat 584.758 kb on - strand, within PS417_02560at 585.125 kb on + strand, within PS417_02560at 585.126 kb on - strand, within PS417_02560at 585.126 kb on - strand, within PS417_02560at 585.330 kb on - strandat 585.388 kb on + strandat 585.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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581,765 - -1.2
581,767 - -0.2
581,781 - -0.8
581,867 + +0.1
581,868 - -1.8
581,909 + -1.0
581,919 + -0.9
581,919 + +0.1
581,930 + -0.5
581,931 - -3.8
581,931 - -4.5
581,931 - -2.1
581,931 - -3.2
581,931 - -4.1
582,171 + -2.0
582,171 + -3.1
582,171 + +0.5
582,171 + -2.5
582,171 + -3.5
582,172 - -1.9
582,172 - -1.9
582,172 - -2.3
582,189 + -3.0
582,189 + -1.4
582,398 - PS417_02555 0.17 -2.6
582,429 + PS417_02555 0.18 -4.2
582,429 + PS417_02555 0.18 -2.3
582,509 + PS417_02555 0.21 -3.7
582,612 + PS417_02555 0.25 -2.1
582,612 + PS417_02555 0.25 -3.6
582,612 + PS417_02555 0.25 -2.3
582,612 + PS417_02555 0.25 -1.1
582,612 + PS417_02555 0.25 -2.9
582,613 - PS417_02555 0.25 -4.4
582,613 - PS417_02555 0.25 -4.5
582,613 - PS417_02555 0.25 -2.7
582,613 - PS417_02555 0.25 -4.1
582,654 + PS417_02555 0.27 -3.0
582,654 + PS417_02555 0.27 -3.3
582,654 + PS417_02555 0.27 -1.9
582,654 + PS417_02555 0.27 -3.1
582,654 + PS417_02555 0.27 -4.3
582,655 - PS417_02555 0.27 -0.8
582,655 - PS417_02555 0.27 -3.7
582,895 - PS417_02555 0.36 -2.7
582,935 - PS417_02555 0.37 -0.6
582,951 + PS417_02555 0.38 -3.2
582,951 + PS417_02555 0.38 -2.3
583,092 + PS417_02555 0.43 -5.1
583,092 + PS417_02555 0.43 -1.1
583,128 + PS417_02555 0.45 -2.3
583,194 + PS417_02555 0.47 -2.1
583,194 + PS417_02555 0.47 -6.2
583,194 + PS417_02555 0.47 -3.4
583,216 + PS417_02555 0.48 -5.5
583,217 - PS417_02555 0.48 -3.2
583,217 - PS417_02555 0.48 -3.6
583,237 - PS417_02555 0.49 -3.9
583,399 + PS417_02555 0.55 -3.0
583,443 + PS417_02555 0.57 +0.3
583,443 + PS417_02555 0.57 -5.2
583,444 - PS417_02555 0.57 -2.1
583,444 - PS417_02555 0.57 -3.4
583,444 - PS417_02555 0.57 -4.2
583,641 + PS417_02555 0.64 -3.7
583,686 + PS417_02555 0.66 -0.5
583,686 + PS417_02555 0.66 -3.8
583,687 - PS417_02555 0.66 -4.6
583,687 - PS417_02555 0.66 -5.2
583,687 - PS417_02555 0.66 -2.1
583,687 - PS417_02555 0.66 -3.4
583,697 + PS417_02555 0.66 -2.8
583,697 + PS417_02555 0.66 -4.2
583,697 + PS417_02555 0.66 -3.8
583,697 + PS417_02555 0.66 -2.8
583,698 - PS417_02555 0.66 -6.0
583,698 - PS417_02555 0.66 -2.3
583,824 + PS417_02555 0.71 -2.0
583,830 + PS417_02555 0.71 -0.7
584,019 + PS417_02555 0.79 -3.6
584,019 + PS417_02555 0.79 -2.3
584,019 + PS417_02555 0.79 -3.4
584,019 + PS417_02555 0.79 -3.1
584,019 + PS417_02555 0.79 -3.3
584,020 - PS417_02555 0.79 -3.2
584,061 + PS417_02555 0.80 -1.7
584,061 + PS417_02555 0.80 -3.3
584,061 + PS417_02555 0.80 -2.5
584,062 - PS417_02555 0.80 -1.1
584,064 + PS417_02555 0.80 -1.7
584,065 - PS417_02555 0.80 -3.2
584,065 - PS417_02555 0.80 -2.7
584,441 + +0.3
584,496 - +0.8
584,610 + -0.3
584,758 - PS417_02560 0.24 -1.1
585,125 + PS417_02560 0.73 -0.7
585,126 - PS417_02560 0.73 +1.8
585,126 - PS417_02560 0.73 -0.2
585,330 - +0.2
585,388 + -0.5
585,463 + -0.0

Or see this region's nucleotide sequence