Strain Fitness in Pseudomonas simiae WCS417 around PS417_25010

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25000 and PS417_25005 are separated by 21 nucleotidesPS417_25005 and PS417_25010 overlap by 4 nucleotidesPS417_25010 and PS417_25015 are separated by 710 nucleotides PS417_25000: PS417_25000 - fimbrial protein, at 5,421,123 to 5,421,701 _25000 PS417_25005: PS417_25005 - molecular chaperone, at 5,421,723 to 5,422,484 _25005 PS417_25010: PS417_25010 - fimbrial assembly protein, at 5,422,481 to 5,425,000 _25010 PS417_25015: PS417_25015 - fimbria A protein, at 5,425,711 to 5,426,232 _25015 Position (kb) 5422 5423 5424 5425 5426Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5421.522 kb on + strand, within PS417_25000at 5421.528 kb on + strand, within PS417_25000at 5421.596 kb on + strand, within PS417_25000at 5421.663 kb on + strandat 5421.664 kb on - strandat 5421.667 kb on - strandat 5421.667 kb on - strandat 5421.667 kb on - strandat 5421.675 kb on + strandat 5421.724 kb on + strandat 5421.764 kb on + strandat 5421.817 kb on + strand, within PS417_25005at 5421.817 kb on + strand, within PS417_25005at 5421.818 kb on - strand, within PS417_25005at 5421.818 kb on - strand, within PS417_25005at 5421.826 kb on + strand, within PS417_25005at 5421.826 kb on + strand, within PS417_25005at 5421.827 kb on - strand, within PS417_25005at 5421.867 kb on + strand, within PS417_25005at 5421.867 kb on + strand, within PS417_25005at 5421.868 kb on - strand, within PS417_25005at 5421.868 kb on - strand, within PS417_25005at 5421.868 kb on - strand, within PS417_25005at 5421.868 kb on - strand, within PS417_25005at 5421.878 kb on + strandat 5421.885 kb on + strand, within PS417_25005at 5421.886 kb on - strand, within PS417_25005at 5421.927 kb on - strand, within PS417_25005at 5421.955 kb on + strand, within PS417_25005at 5421.956 kb on - strand, within PS417_25005at 5421.956 kb on - strand, within PS417_25005at 5421.956 kb on - strand, within PS417_25005at 5421.958 kb on + strand, within PS417_25005at 5421.959 kb on - strand, within PS417_25005at 5421.971 kb on + strand, within PS417_25005at 5422.056 kb on - strand, within PS417_25005at 5422.056 kb on - strand, within PS417_25005at 5422.314 kb on + strand, within PS417_25005at 5422.314 kb on + strand, within PS417_25005at 5422.324 kb on - strand, within PS417_25005at 5422.335 kb on - strand, within PS417_25005at 5422.651 kb on + strandat 5422.735 kb on + strand, within PS417_25010at 5422.787 kb on + strand, within PS417_25010at 5422.788 kb on - strand, within PS417_25010at 5422.788 kb on - strand, within PS417_25010at 5422.857 kb on - strand, within PS417_25010at 5422.857 kb on - strand, within PS417_25010at 5422.933 kb on - strand, within PS417_25010at 5422.948 kb on - strandat 5422.972 kb on + strand, within PS417_25010at 5422.973 kb on - strand, within PS417_25010at 5423.000 kb on + strand, within PS417_25010at 5423.000 kb on + strand, within PS417_25010at 5423.000 kb on + strand, within PS417_25010at 5423.027 kb on - strand, within PS417_25010at 5423.095 kb on + strand, within PS417_25010at 5423.096 kb on - strand, within PS417_25010at 5423.125 kb on + strand, within PS417_25010at 5423.125 kb on + strand, within PS417_25010at 5423.125 kb on + strand, within PS417_25010at 5423.126 kb on - strand, within PS417_25010at 5423.126 kb on - strand, within PS417_25010at 5423.147 kb on - strand, within PS417_25010at 5423.183 kb on - strand, within PS417_25010at 5423.230 kb on - strand, within PS417_25010at 5423.230 kb on - strandat 5423.230 kb on - strand, within PS417_25010at 5423.236 kb on + strand, within PS417_25010at 5423.236 kb on + strand, within PS417_25010at 5423.236 kb on + strand, within PS417_25010at 5423.237 kb on - strand, within PS417_25010at 5423.353 kb on + strand, within PS417_25010at 5423.354 kb on - strand, within PS417_25010at 5423.360 kb on - strand, within PS417_25010at 5423.372 kb on - strand, within PS417_25010at 5423.437 kb on - strand, within PS417_25010at 5423.484 kb on + strand, within PS417_25010at 5423.499 kb on + strand, within PS417_25010at 5423.499 kb on + strand, within PS417_25010at 5423.500 kb on - strand, within PS417_25010at 5423.500 kb on - strand, within PS417_25010at 5423.625 kb on - strand, within PS417_25010at 5423.625 kb on - strand, within PS417_25010at 5423.634 kb on + strand, within PS417_25010at 5423.635 kb on - strand, within PS417_25010at 5423.635 kb on - strand, within PS417_25010at 5423.635 kb on - strand, within PS417_25010at 5423.635 kb on - strand, within PS417_25010at 5423.635 kb on - strand, within PS417_25010at 5423.637 kb on - strand, within PS417_25010at 5423.658 kb on - strand, within PS417_25010at 5423.658 kb on - strand, within PS417_25010at 5423.658 kb on - strand, within PS417_25010at 5423.662 kb on - strand, within PS417_25010at 5423.878 kb on + strand, within PS417_25010at 5423.878 kb on + strand, within PS417_25010at 5423.878 kb on + strand, within PS417_25010at 5423.878 kb on + strandat 5423.879 kb on - strand, within PS417_25010at 5423.879 kb on - strand, within PS417_25010at 5423.879 kb on - strand, within PS417_25010at 5423.879 kb on - strand, within PS417_25010at 5423.879 kb on - strand, within PS417_25010at 5423.879 kb on - strand, within PS417_25010at 5423.879 kb on - strand, within PS417_25010at 5423.891 kb on - strand, within PS417_25010at 5423.972 kb on + strand, within PS417_25010at 5423.972 kb on + strand, within PS417_25010at 5423.973 kb on - strand, within PS417_25010at 5423.973 kb on - strand, within PS417_25010at 5423.999 kb on + strand, within PS417_25010at 5423.999 kb on + strand, within PS417_25010at 5424.000 kb on - strand, within PS417_25010at 5424.000 kb on - strand, within PS417_25010at 5424.006 kb on + strand, within PS417_25010at 5424.007 kb on - strand, within PS417_25010at 5424.007 kb on - strand, within PS417_25010at 5424.028 kb on + strand, within PS417_25010at 5424.028 kb on + strand, within PS417_25010at 5424.028 kb on + strand, within PS417_25010at 5424.028 kb on + strand, within PS417_25010at 5424.028 kb on + strand, within PS417_25010at 5424.029 kb on - strand, within PS417_25010at 5424.029 kb on - strand, within PS417_25010at 5424.029 kb on - strand, within PS417_25010at 5424.029 kb on - strand, within PS417_25010at 5424.034 kb on - strand, within PS417_25010at 5424.034 kb on - strand, within PS417_25010at 5424.113 kb on + strand, within PS417_25010at 5424.169 kb on - strand, within PS417_25010at 5424.208 kb on + strand, within PS417_25010at 5424.208 kb on + strand, within PS417_25010at 5424.260 kb on + strand, within PS417_25010at 5424.281 kb on - strand, within PS417_25010at 5424.323 kb on - strand, within PS417_25010at 5424.324 kb on + strand, within PS417_25010at 5424.324 kb on + strand, within PS417_25010at 5424.324 kb on + strand, within PS417_25010at 5424.325 kb on - strand, within PS417_25010at 5424.330 kb on + strand, within PS417_25010at 5424.330 kb on + strand, within PS417_25010at 5424.331 kb on - strand, within PS417_25010at 5424.331 kb on - strand, within PS417_25010at 5424.345 kb on - strand, within PS417_25010at 5424.345 kb on - strand, within PS417_25010at 5424.347 kb on + strand, within PS417_25010at 5424.347 kb on + strand, within PS417_25010at 5424.347 kb on + strand, within PS417_25010at 5424.348 kb on - strand, within PS417_25010at 5424.348 kb on - strand, within PS417_25010at 5424.348 kb on - strand, within PS417_25010at 5424.348 kb on - strand, within PS417_25010at 5424.348 kb on - strand, within PS417_25010at 5424.348 kb on - strand, within PS417_25010at 5424.379 kb on - strand, within PS417_25010at 5424.384 kb on + strand, within PS417_25010at 5424.384 kb on + strand, within PS417_25010at 5424.404 kb on - strand, within PS417_25010at 5424.485 kb on + strand, within PS417_25010at 5424.485 kb on + strand, within PS417_25010at 5424.485 kb on + strand, within PS417_25010at 5424.486 kb on - strand, within PS417_25010at 5424.486 kb on - strand, within PS417_25010at 5424.534 kb on + strand, within PS417_25010at 5424.535 kb on - strand, within PS417_25010at 5424.535 kb on - strand, within PS417_25010at 5424.538 kb on + strand, within PS417_25010at 5424.538 kb on + strand, within PS417_25010at 5424.538 kb on + strand, within PS417_25010at 5424.539 kb on - strand, within PS417_25010at 5424.557 kb on - strand, within PS417_25010at 5424.557 kb on - strand, within PS417_25010at 5424.559 kb on - strand, within PS417_25010at 5424.559 kb on - strand, within PS417_25010at 5424.559 kb on - strand, within PS417_25010at 5424.559 kb on - strand, within PS417_25010at 5424.569 kb on - strand, within PS417_25010at 5424.622 kb on + strand, within PS417_25010at 5424.622 kb on + strand, within PS417_25010at 5424.622 kb on + strand, within PS417_25010at 5424.623 kb on - strand, within PS417_25010at 5424.633 kb on + strand, within PS417_25010at 5424.633 kb on + strand, within PS417_25010at 5424.633 kb on + strand, within PS417_25010at 5424.634 kb on - strand, within PS417_25010at 5424.656 kb on + strand, within PS417_25010at 5424.703 kb on + strand, within PS417_25010at 5424.784 kb on + strandat 5424.785 kb on - strandat 5424.835 kb on - strandat 5424.868 kb on + strandat 5424.891 kb on + strandat 5424.940 kb on + strandat 5424.976 kb on + strandat 5425.070 kb on - strandat 5425.180 kb on + strandat 5425.182 kb on + strandat 5425.403 kb on + strandat 5425.403 kb on + strandat 5425.414 kb on + strandat 5425.630 kb on + strandat 5425.638 kb on - strandat 5425.652 kb on + strandat 5425.663 kb on + strandat 5425.663 kb on + strandat 5425.709 kb on + strandat 5425.709 kb on + strandat 5425.787 kb on - strand, within PS417_25015at 5425.787 kb on - strand, within PS417_25015at 5425.790 kb on + strand, within PS417_25015at 5425.809 kb on + strand, within PS417_25015at 5425.809 kb on + strand, within PS417_25015at 5425.843 kb on - strand, within PS417_25015at 5425.843 kb on - strand, within PS417_25015at 5425.975 kb on - strand, within PS417_25015at 5425.990 kb on + strand, within PS417_25015at 5425.990 kb on + strand, within PS417_25015

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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5,421,522 + PS417_25000 0.69 +0.7
5,421,528 + PS417_25000 0.70 +0.5
5,421,596 + PS417_25000 0.82 +0.1
5,421,663 + +2.3
5,421,664 - -0.2
5,421,667 - -1.1
5,421,667 - -1.6
5,421,667 - -1.3
5,421,675 + -0.1
5,421,724 + +0.5
5,421,764 + -0.2
5,421,817 + PS417_25005 0.12 +0.2
5,421,817 + PS417_25005 0.12 +1.0
5,421,818 - PS417_25005 0.12 -1.7
5,421,818 - PS417_25005 0.12 -2.1
5,421,826 + PS417_25005 0.14 +0.1
5,421,826 + PS417_25005 0.14 -2.1
5,421,827 - PS417_25005 0.14 -1.4
5,421,867 + PS417_25005 0.19 +0.1
5,421,867 + PS417_25005 0.19 -0.6
5,421,868 - PS417_25005 0.19 +0.0
5,421,868 - PS417_25005 0.19 -1.6
5,421,868 - PS417_25005 0.19 -1.0
5,421,868 - PS417_25005 0.19 -0.9
5,421,878 + +0.4
5,421,885 + PS417_25005 0.21 +0.3
5,421,886 - PS417_25005 0.21 -1.4
5,421,927 - PS417_25005 0.27 -1.2
5,421,955 + PS417_25005 0.30 -0.2
5,421,956 - PS417_25005 0.31 -2.3
5,421,956 - PS417_25005 0.31 -1.1
5,421,956 - PS417_25005 0.31 -1.4
5,421,958 + PS417_25005 0.31 +0.5
5,421,959 - PS417_25005 0.31 -1.1
5,421,971 + PS417_25005 0.33 +0.4
5,422,056 - PS417_25005 0.44 -1.0
5,422,056 - PS417_25005 0.44 -1.0
5,422,314 + PS417_25005 0.78 +1.3
5,422,314 + PS417_25005 0.78 -0.4
5,422,324 - PS417_25005 0.79 -1.9
5,422,335 - PS417_25005 0.80 -1.9
5,422,651 + +0.2
5,422,735 + PS417_25010 0.10 +0.1
5,422,787 + PS417_25010 0.12 +0.5
5,422,788 - PS417_25010 0.12 -1.6
5,422,788 - PS417_25010 0.12 -1.0
5,422,857 - PS417_25010 0.15 -1.9
5,422,857 - PS417_25010 0.15 +0.0
5,422,933 - PS417_25010 0.18 -0.7
5,422,948 - +0.0
5,422,972 + PS417_25010 0.19 +1.6
5,422,973 - PS417_25010 0.20 -3.6
5,423,000 + PS417_25010 0.21 -0.3
5,423,000 + PS417_25010 0.21 -0.0
5,423,000 + PS417_25010 0.21 +0.2
5,423,027 - PS417_25010 0.22 -0.1
5,423,095 + PS417_25010 0.24 +0.2
5,423,096 - PS417_25010 0.24 -1.1
5,423,125 + PS417_25010 0.26 -1.2
5,423,125 + PS417_25010 0.26 +0.1
5,423,125 + PS417_25010 0.26 -0.2
5,423,126 - PS417_25010 0.26 -1.1
5,423,126 - PS417_25010 0.26 -1.3
5,423,147 - PS417_25010 0.26 -0.8
5,423,183 - PS417_25010 0.28 -2.0
5,423,230 - PS417_25010 0.30 -0.8
5,423,230 - -1.0
5,423,230 - PS417_25010 0.30 -0.4
5,423,236 + PS417_25010 0.30 +0.1
5,423,236 + PS417_25010 0.30 +0.4
5,423,236 + PS417_25010 0.30 +0.2
5,423,237 - PS417_25010 0.30 -1.1
5,423,353 + PS417_25010 0.35 -0.7
5,423,354 - PS417_25010 0.35 -1.6
5,423,360 - PS417_25010 0.35 -2.8
5,423,372 - PS417_25010 0.35 -0.6
5,423,437 - PS417_25010 0.38 -2.1
5,423,484 + PS417_25010 0.40 +0.7
5,423,499 + PS417_25010 0.40 +0.4
5,423,499 + PS417_25010 0.40 +0.3
5,423,500 - PS417_25010 0.40 -1.1
5,423,500 - PS417_25010 0.40 -1.0
5,423,625 - PS417_25010 0.45 -0.0
5,423,625 - PS417_25010 0.45 -1.2
5,423,634 + PS417_25010 0.46 +1.0
5,423,635 - PS417_25010 0.46 -1.2
5,423,635 - PS417_25010 0.46 -1.1
5,423,635 - PS417_25010 0.46 +0.2
5,423,635 - PS417_25010 0.46 -1.5
5,423,635 - PS417_25010 0.46 -0.2
5,423,637 - PS417_25010 0.46 -0.7
5,423,658 - PS417_25010 0.47 -1.0
5,423,658 - PS417_25010 0.47 -0.4
5,423,658 - PS417_25010 0.47 -0.7
5,423,662 - PS417_25010 0.47 -0.9
5,423,878 + PS417_25010 0.55 +0.4
5,423,878 + PS417_25010 0.55 +0.3
5,423,878 + PS417_25010 0.55 -0.1
5,423,878 + +1.0
5,423,879 - PS417_25010 0.55 +0.3
5,423,879 - PS417_25010 0.55 -1.1
5,423,879 - PS417_25010 0.55 -1.0
5,423,879 - PS417_25010 0.55 -1.2
5,423,879 - PS417_25010 0.55 -1.2
5,423,879 - PS417_25010 0.55 -1.7
5,423,879 - PS417_25010 0.55 -1.8
5,423,891 - PS417_25010 0.56 -1.1
5,423,972 + PS417_25010 0.59 -0.3
5,423,972 + PS417_25010 0.59 -0.2
5,423,973 - PS417_25010 0.59 -0.3
5,423,973 - PS417_25010 0.59 +1.2
5,423,999 + PS417_25010 0.60 +1.3
5,423,999 + PS417_25010 0.60 +0.2
5,424,000 - PS417_25010 0.60 +0.8
5,424,000 - PS417_25010 0.60 -0.7
5,424,006 + PS417_25010 0.61 +1.0
5,424,007 - PS417_25010 0.61 -1.7
5,424,007 - PS417_25010 0.61 -1.5
5,424,028 + PS417_25010 0.61 +0.2
5,424,028 + PS417_25010 0.61 +0.7
5,424,028 + PS417_25010 0.61 -0.7
5,424,028 + PS417_25010 0.61 -0.5
5,424,028 + PS417_25010 0.61 +0.3
5,424,029 - PS417_25010 0.61 -2.3
5,424,029 - PS417_25010 0.61 -1.1
5,424,029 - PS417_25010 0.61 -0.3
5,424,029 - PS417_25010 0.61 +1.9
5,424,034 - PS417_25010 0.62 +1.2
5,424,034 - PS417_25010 0.62 -0.2
5,424,113 + PS417_25010 0.65 +1.0
5,424,169 - PS417_25010 0.67 +2.0
5,424,208 + PS417_25010 0.69 +0.1
5,424,208 + PS417_25010 0.69 +0.1
5,424,260 + PS417_25010 0.71 -0.1
5,424,281 - PS417_25010 0.71 -0.9
5,424,323 - PS417_25010 0.73 +0.0
5,424,324 + PS417_25010 0.73 +0.1
5,424,324 + PS417_25010 0.73 +0.7
5,424,324 + PS417_25010 0.73 -0.4
5,424,325 - PS417_25010 0.73 +0.0
5,424,330 + PS417_25010 0.73 +0.1
5,424,330 + PS417_25010 0.73 +0.2
5,424,331 - PS417_25010 0.73 +1.0
5,424,331 - PS417_25010 0.73 -0.7
5,424,345 - PS417_25010 0.74 -0.4
5,424,345 - PS417_25010 0.74 -1.1
5,424,347 + PS417_25010 0.74 +0.3
5,424,347 + PS417_25010 0.74 +0.5
5,424,347 + PS417_25010 0.74 -0.2
5,424,348 - PS417_25010 0.74 +0.0
5,424,348 - PS417_25010 0.74 -0.9
5,424,348 - PS417_25010 0.74 -0.3
5,424,348 - PS417_25010 0.74 -1.0
5,424,348 - PS417_25010 0.74 -0.8
5,424,348 - PS417_25010 0.74 -2.1
5,424,379 - PS417_25010 0.75 -0.4
5,424,384 + PS417_25010 0.76 +0.6
5,424,384 + PS417_25010 0.76 +0.1
5,424,404 - PS417_25010 0.76 +0.0
5,424,485 + PS417_25010 0.80 +0.1
5,424,485 + PS417_25010 0.80 -0.4
5,424,485 + PS417_25010 0.80 +0.4
5,424,486 - PS417_25010 0.80 -0.6
5,424,486 - PS417_25010 0.80 -1.2
5,424,534 + PS417_25010 0.81 +1.4
5,424,535 - PS417_25010 0.82 -0.7
5,424,535 - PS417_25010 0.82 -1.1
5,424,538 + PS417_25010 0.82 +0.5
5,424,538 + PS417_25010 0.82 -0.2
5,424,538 + PS417_25010 0.82 -1.4
5,424,539 - PS417_25010 0.82 -0.8
5,424,557 - PS417_25010 0.82 -1.4
5,424,557 - PS417_25010 0.82 -0.7
5,424,559 - PS417_25010 0.82 -0.7
5,424,559 - PS417_25010 0.82 -0.3
5,424,559 - PS417_25010 0.82 +2.4
5,424,559 - PS417_25010 0.82 -0.8
5,424,569 - PS417_25010 0.83 -0.4
5,424,622 + PS417_25010 0.85 +0.0
5,424,622 + PS417_25010 0.85 -1.3
5,424,622 + PS417_25010 0.85 +0.8
5,424,623 - PS417_25010 0.85 -1.3
5,424,633 + PS417_25010 0.85 -0.3
5,424,633 + PS417_25010 0.85 +0.0
5,424,633 + PS417_25010 0.85 -0.0
5,424,634 - PS417_25010 0.85 -0.2
5,424,656 + PS417_25010 0.86 -0.1
5,424,703 + PS417_25010 0.88 -0.2
5,424,784 + -0.5
5,424,785 - -0.6
5,424,835 - -0.7
5,424,868 + +0.7
5,424,891 + +0.3
5,424,940 + -0.1
5,424,976 + +0.3
5,425,070 - -0.7
5,425,180 + +0.9
5,425,182 + -0.4
5,425,403 + -0.1
5,425,403 + +0.5
5,425,414 + +0.1
5,425,630 + +0.4
5,425,638 - +0.4
5,425,652 + +0.0
5,425,663 + +0.3
5,425,663 + +0.7
5,425,709 + +0.1
5,425,709 + +0.4
5,425,787 - PS417_25015 0.15 +1.4
5,425,787 - PS417_25015 0.15 -0.6
5,425,790 + PS417_25015 0.15 +0.8
5,425,809 + PS417_25015 0.19 -1.3
5,425,809 + PS417_25015 0.19 -0.0
5,425,843 - PS417_25015 0.25 +0.4
5,425,843 - PS417_25015 0.25 +0.4
5,425,975 - PS417_25015 0.51 -1.4
5,425,990 + PS417_25015 0.53 +0.3
5,425,990 + PS417_25015 0.53 +0.3

Or see this region's nucleotide sequence