Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21930 and PS417_21935 are separated by 88 nucleotides PS417_21935 and PS417_21940 are separated by 11 nucleotides PS417_21940 and PS417_21945 are separated by 204 nucleotides
PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328
_21930
PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271
_21935
PS417_21940: PS417_21940 - hypothetical protein, at 4,760,283 to 4,760,528
_21940
PS417_21945: PS417_21945 - RNA polymerase subunit sigma-24, at 4,760,733 to 4,761,956
_21945
Position (kb) 4760
4761 Strain fitness (log2 ratio) -2
-1
0
1 at 4759.391 kb on - strand at 4759.554 kb on - strand, within PS417_21935 at 4759.721 kb on - strand, within PS417_21935 at 4759.721 kb on - strand, within PS417_21935 at 4759.959 kb on - strand, within PS417_21935 at 4760.117 kb on + strand, within PS417_21935 at 4760.323 kb on + strand at 4760.394 kb on - strand, within PS417_21940 at 4760.592 kb on + strand at 4760.722 kb on + strand at 4760.821 kb on + strand at 4760.894 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.028 kb on + strand, within PS417_21945 at 4761.028 kb on + strand, within PS417_21945 at 4761.409 kb on + strand, within PS417_21945 at 4761.409 kb on + strand, within PS417_21945 at 4761.409 kb on + strand, within PS417_21945 at 4761.424 kb on - strand, within PS417_21945
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,759,391 - -0.2 4,759,554 - PS417_21935 0.16 +0.9 4,759,721 - PS417_21935 0.36 -0.3 4,759,721 - PS417_21935 0.36 +0.3 4,759,959 - PS417_21935 0.63 -0.0 4,760,117 + PS417_21935 0.82 +0.6 4,760,323 + -0.8 4,760,394 - PS417_21940 0.45 +0.2 4,760,592 + +0.3 4,760,722 + +0.5 4,760,821 + -0.5 4,760,894 - PS417_21945 0.13 -0.6 4,761,022 - PS417_21945 0.24 -0.4 4,761,022 - PS417_21945 0.24 -2.0 4,761,022 - PS417_21945 0.24 +0.1 4,761,028 + PS417_21945 0.24 +0.4 4,761,028 + PS417_21945 0.24 -0.3 4,761,409 + PS417_21945 0.55 -0.0 4,761,409 + PS417_21945 0.55 +0.2 4,761,409 + PS417_21945 0.55 -0.3 4,761,424 - PS417_21945 0.56 +1.1
Or see this region's nucleotide sequence