Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21130 and PS417_21135 are separated by 13 nucleotides PS417_21135 and PS417_21140 overlap by 20 nucleotides
PS417_21130: PS417_21130 - nitrate reductase, at 4,597,964 to 4,599,493
_21130
PS417_21135: PS417_21135 - Asp/Glu/hydantoin racemase, at 4,599,507 to 4,600,223
_21135
PS417_21140: PS417_21140 - LysR family transcriptional regulator, at 4,600,204 to 4,601,133
_21140
Position (kb) 4599
4600
4601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4598.547 kb on - strand, within PS417_21130 at 4598.630 kb on + strand, within PS417_21130 at 4598.631 kb on - strand, within PS417_21130 at 4598.701 kb on + strand, within PS417_21130 at 4598.701 kb on + strand, within PS417_21130 at 4598.736 kb on - strand, within PS417_21130 at 4599.047 kb on + strand, within PS417_21130 at 4599.047 kb on + strand, within PS417_21130 at 4599.140 kb on + strand, within PS417_21130 at 4599.141 kb on - strand, within PS417_21130 at 4599.141 kb on - strand, within PS417_21130 at 4599.179 kb on + strand, within PS417_21130 at 4599.180 kb on - strand, within PS417_21130 at 4599.180 kb on - strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.243 kb on - strand, within PS417_21130 at 4599.243 kb on - strand, within PS417_21130 at 4599.243 kb on - strand, within PS417_21130 at 4599.270 kb on - strand, within PS417_21130 at 4599.272 kb on + strand, within PS417_21130 at 4599.292 kb on - strand, within PS417_21130 at 4599.292 kb on - strand, within PS417_21130 at 4599.398 kb on - strand at 4599.413 kb on + strand at 4599.413 kb on + strand at 4599.414 kb on - strand at 4599.443 kb on + strand at 4599.491 kb on + strand at 4599.513 kb on - strand at 4599.618 kb on + strand, within PS417_21135 at 4599.657 kb on + strand, within PS417_21135 at 4599.658 kb on - strand, within PS417_21135 at 4599.658 kb on - strand, within PS417_21135 at 4599.658 kb on - strand, within PS417_21135 at 4599.834 kb on + strand, within PS417_21135 at 4599.903 kb on + strand, within PS417_21135 at 4599.904 kb on - strand, within PS417_21135 at 4599.904 kb on - strand, within PS417_21135 at 4599.904 kb on - strand, within PS417_21135 at 4600.179 kb on + strand at 4600.302 kb on + strand, within PS417_21140 at 4600.302 kb on + strand, within PS417_21140 at 4600.303 kb on - strand, within PS417_21140 at 4600.344 kb on - strand, within PS417_21140 at 4600.622 kb on + strand, within PS417_21140 at 4600.817 kb on + strand, within PS417_21140 at 4601.169 kb on - strand at 4601.171 kb on - strand at 4601.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,598,547 - PS417_21130 0.38 +0.1 4,598,630 + PS417_21130 0.44 -0.6 4,598,631 - PS417_21130 0.44 +2.0 4,598,701 + PS417_21130 0.48 -0.5 4,598,701 + PS417_21130 0.48 +0.0 4,598,736 - PS417_21130 0.50 +1.2 4,599,047 + PS417_21130 0.71 -0.0 4,599,047 + PS417_21130 0.71 +0.5 4,599,140 + PS417_21130 0.77 -0.5 4,599,141 - PS417_21130 0.77 +2.3 4,599,141 - PS417_21130 0.77 -0.4 4,599,179 + PS417_21130 0.79 +0.5 4,599,180 - PS417_21130 0.79 -0.3 4,599,180 - PS417_21130 0.79 -0.2 4,599,242 + PS417_21130 0.84 +0.5 4,599,242 + PS417_21130 0.84 -0.2 4,599,242 + PS417_21130 0.84 +1.3 4,599,242 + PS417_21130 0.84 +0.2 4,599,242 + PS417_21130 0.84 -0.2 4,599,243 - PS417_21130 0.84 -1.6 4,599,243 - PS417_21130 0.84 +0.1 4,599,243 - PS417_21130 0.84 -0.3 4,599,270 - PS417_21130 0.85 -0.1 4,599,272 + PS417_21130 0.85 -0.5 4,599,292 - PS417_21130 0.87 -1.4 4,599,292 - PS417_21130 0.87 -0.3 4,599,398 - -0.3 4,599,413 + -0.5 4,599,413 + +0.1 4,599,414 - -0.2 4,599,443 + -0.1 4,599,491 + -0.3 4,599,513 - -0.1 4,599,618 + PS417_21135 0.15 +0.2 4,599,657 + PS417_21135 0.21 -1.9 4,599,658 - PS417_21135 0.21 -0.6 4,599,658 - PS417_21135 0.21 +0.5 4,599,658 - PS417_21135 0.21 -1.5 4,599,834 + PS417_21135 0.46 -0.4 4,599,903 + PS417_21135 0.55 -0.5 4,599,904 - PS417_21135 0.55 -0.9 4,599,904 - PS417_21135 0.55 -1.2 4,599,904 - PS417_21135 0.55 -0.9 4,600,179 + +0.1 4,600,302 + PS417_21140 0.11 -0.3 4,600,302 + PS417_21140 0.11 -0.2 4,600,303 - PS417_21140 0.11 -0.2 4,600,344 - PS417_21140 0.15 +0.7 4,600,622 + PS417_21140 0.45 -1.0 4,600,817 + PS417_21140 0.66 +0.4 4,601,169 - +0.1 4,601,171 - +0.2 4,601,184 + +0.9
Or see this region's nucleotide sequence