Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01825 and PS417_01830 are separated by 87 nucleotides PS417_01830 and PS417_01835 overlap by 4 nucleotides PS417_01835 and PS417_01840 overlap by 4 nucleotides PS417_01840 and PS417_01845 are separated by 10 nucleotides PS417_01845 and PS417_01850 are separated by 26 nucleotides
PS417_01825: PS417_01825 - chemotaxis protein, at 407,805 to 409,721
_01825
PS417_01830: PS417_01830 - 16S rRNA methyltransferase, at 409,809 to 410,516
_01830
PS417_01835: PS417_01835 - twin-arginine protein translocation system subunit TatC, at 410,513 to 411,301
_01835
PS417_01840: PS417_01840 - preprotein translocase, at 411,298 to 411,702
_01840
PS417_01845: PS417_01845 - preprotein translocase subunit SecA, at 411,713 to 411,991
_01845
PS417_01850: PS417_01850 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 412,018 to 412,350
_01850
Position (kb) 410
411
412 Strain fitness (log2 ratio) -1
0
1 at 409.633 kb on - strand at 409.644 kb on + strand at 409.645 kb on - strand at 409.645 kb on - strand at 409.789 kb on + strand at 410.189 kb on - strand, within PS417_01830 at 411.322 kb on - strand at 411.767 kb on - strand, within PS417_01845 at 412.141 kb on + strand, within PS417_01850 at 412.142 kb on - strand, within PS417_01850 at 412.142 kb on - strand, within PS417_01850 at 412.280 kb on + strand, within PS417_01850 at 412.280 kb on + strand, within PS417_01850 at 412.281 kb on - strand, within PS417_01850
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 409,633 - +0.1 409,644 + -0.0 409,645 - -0.3 409,645 - -0.3 409,789 + +0.4 410,189 - PS417_01830 0.54 -1.7 411,322 - +0.2 411,767 - PS417_01845 0.19 -0.6 412,141 + PS417_01850 0.37 +0.0 412,142 - PS417_01850 0.37 -0.1 412,142 - PS417_01850 0.37 +1.0 412,280 + PS417_01850 0.79 -0.0 412,280 + PS417_01850 0.79 -0.2 412,281 - PS417_01850 0.79 -0.2
Or see this region's nucleotide sequence