Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01820 and PS417_01825 are separated by 182 nucleotides PS417_01825 and PS417_01830 are separated by 87 nucleotides PS417_01830 and PS417_01835 overlap by 4 nucleotides
PS417_01820: PS417_01820 - chemotaxis protein, at 405,715 to 407,622
_01820
PS417_01825: PS417_01825 - chemotaxis protein, at 407,805 to 409,721
_01825
PS417_01830: PS417_01830 - 16S rRNA methyltransferase, at 409,809 to 410,516
_01830
PS417_01835: PS417_01835 - twin-arginine protein translocation system subunit TatC, at 410,513 to 411,301
_01835
Position (kb) 407
408
409
410 Strain fitness (log2 ratio) -1
0
1 at 406.890 kb on + strand, within PS417_01820 at 406.890 kb on + strand, within PS417_01820 at 406.936 kb on + strand, within PS417_01820 at 407.034 kb on - strand, within PS417_01820 at 407.301 kb on - strand, within PS417_01820 at 407.344 kb on - strand, within PS417_01820 at 407.344 kb on - strand, within PS417_01820 at 407.383 kb on - strand, within PS417_01820 at 407.489 kb on + strand at 409.156 kb on + strand, within PS417_01825 at 409.156 kb on + strand, within PS417_01825 at 409.364 kb on + strand, within PS417_01825 at 409.365 kb on - strand, within PS417_01825 at 409.365 kb on - strand, within PS417_01825 at 409.633 kb on - strand at 409.644 kb on + strand at 409.645 kb on - strand at 409.645 kb on - strand at 409.789 kb on + strand at 410.189 kb on - strand, within PS417_01830
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 406,890 + PS417_01820 0.62 -0.3 406,890 + PS417_01820 0.62 -0.4 406,936 + PS417_01820 0.64 -0.1 407,034 - PS417_01820 0.69 +0.6 407,301 - PS417_01820 0.83 -0.1 407,344 - PS417_01820 0.85 +0.2 407,344 - PS417_01820 0.85 -0.1 407,383 - PS417_01820 0.87 -0.5 407,489 + -0.4 409,156 + PS417_01825 0.70 -0.6 409,156 + PS417_01825 0.70 -0.0 409,364 + PS417_01825 0.81 -1.6 409,365 - PS417_01825 0.81 -1.0 409,365 - PS417_01825 0.81 -1.6 409,633 - +0.1 409,644 + -0.0 409,645 - -0.3 409,645 - -0.3 409,789 + +0.4 410,189 - PS417_01830 0.54 -1.7
Or see this region's nucleotide sequence