Strain Fitness in Pseudomonas simiae WCS417 around PS417_16475
Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Tetracycline 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,599,151 | - | PS417_16475 | 0.40 | -1.3 | |
3,599,218 | - | PS417_16475 | 0.58 | -1.3 | |
3,599,218 | - | PS417_16475 | 0.58 | -0.1 | |
3,599,330 | - | PS417_16475 | 0.88 | -0.7 | |
3,599,358 | - | -0.3 | |||
3,599,504 | + | +1.1 | |||
3,599,546 | + | PS417_16480 | 0.13 | +1.5 | |
3,599,669 | + | PS417_16480 | 0.22 | +0.2 | |
3,599,703 | - | PS417_16480 | 0.25 | +0.3 | |
3,599,703 | - | PS417_16480 | 0.25 | -0.3 | |
3,599,928 | + | PS417_16480 | 0.42 | +0.2 | |
3,599,928 | + | PS417_16480 | 0.42 | +0.2 | |
3,599,929 | - | PS417_16480 | 0.42 | -0.1 | |
3,599,952 | - | PS417_16480 | 0.44 | -0.1 | |
3,599,952 | - | PS417_16480 | 0.44 | -0.3 | |
3,600,224 | + | PS417_16480 | 0.64 | +0.9 | |
3,600,225 | - | PS417_16480 | 0.64 | +0.1 | |
3,600,225 | - | PS417_16480 | 0.64 | -1.0 | |
3,600,317 | + | PS417_16480 | 0.71 | -0.0 | |
3,600,318 | - | PS417_16480 | 0.71 | -2.0 | |
3,600,318 | - | PS417_16480 | 0.71 | +2.0 | |
3,600,318 | - | PS417_16480 | 0.71 | +0.1 |
Or see this region's nucleotide sequence