Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16010 and PS417_16015 are separated by 39 nucleotides PS417_16015 and PS417_16020 are separated by 107 nucleotides PS417_16020 and PS417_16025 are separated by 217 nucleotides PS417_16025 and PS417_16030 overlap by 4 nucleotides
PS417_16010: PS417_16010 - alkanesulfonate monooxygenase, at 3,509,412 to 3,510,494
_16010
PS417_16015: PS417_16015 - aldolase, at 3,510,534 to 3,511,328
_16015
PS417_16020: PS417_16020 - LysR family transcriptional regulator, at 3,511,436 to 3,512,341
_16020
PS417_16025: PS417_16025 - cysteine dioxygenase, at 3,512,559 to 3,513,170
_16025
PS417_16030: PS417_16030 - sulfurtransferase, at 3,513,167 to 3,514,750
_16030
Position (kb)
3511
3512
3513 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3510.525 kb on + strand at 3510.544 kb on + strand at 3510.759 kb on + strand, within PS417_16015 at 3510.792 kb on - strand, within PS417_16015 at 3510.881 kb on - strand, within PS417_16015 at 3511.031 kb on - strand, within PS417_16015 at 3511.039 kb on + strand, within PS417_16015 at 3511.040 kb on - strand, within PS417_16015 at 3511.192 kb on + strand, within PS417_16015 at 3511.192 kb on + strand, within PS417_16015 at 3511.193 kb on - strand, within PS417_16015 at 3511.214 kb on - strand, within PS417_16015 at 3511.352 kb on - strand at 3511.528 kb on - strand, within PS417_16020 at 3511.664 kb on + strand, within PS417_16020 at 3511.665 kb on - strand, within PS417_16020 at 3512.002 kb on + strand, within PS417_16020 at 3512.043 kb on - strand, within PS417_16020 at 3512.355 kb on - strand at 3512.386 kb on + strand at 3512.386 kb on + strand at 3512.386 kb on + strand at 3512.387 kb on - strand at 3512.436 kb on + strand at 3512.457 kb on - strand at 3512.589 kb on - strand at 3512.589 kb on - strand at 3512.600 kb on - strand at 3513.326 kb on + strand, within PS417_16030 at 3513.326 kb on + strand, within PS417_16030 at 3513.326 kb on + strand, within PS417_16030 at 3513.327 kb on - strand, within PS417_16030 at 3513.327 kb on - strand, within PS417_16030
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,510,525 + -0.6 3,510,544 + +0.0 3,510,759 + PS417_16015 0.28 -0.7 3,510,792 - PS417_16015 0.32 -0.1 3,510,881 - PS417_16015 0.44 +0.5 3,511,031 - PS417_16015 0.63 -0.6 3,511,039 + PS417_16015 0.64 -0.1 3,511,040 - PS417_16015 0.64 -0.7 3,511,192 + PS417_16015 0.83 +0.3 3,511,192 + PS417_16015 0.83 +0.6 3,511,193 - PS417_16015 0.83 +1.3 3,511,214 - PS417_16015 0.86 -2.3 3,511,352 - +0.2 3,511,528 - PS417_16020 0.10 -1.7 3,511,664 + PS417_16020 0.25 +0.0 3,511,665 - PS417_16020 0.25 -1.2 3,512,002 + PS417_16020 0.62 -2.0 3,512,043 - PS417_16020 0.67 +0.5 3,512,355 - -0.3 3,512,386 + -0.9 3,512,386 + -0.1 3,512,386 + +0.4 3,512,387 - -1.3 3,512,436 + +0.1 3,512,457 - +2.7 3,512,589 - -0.2 3,512,589 - +1.3 3,512,600 - -0.7 3,513,326 + PS417_16030 0.10 -0.2 3,513,326 + PS417_16030 0.10 -0.5 3,513,326 + PS417_16030 0.10 +0.8 3,513,327 - PS417_16030 0.10 +0.4 3,513,327 - PS417_16030 0.10 +0.1
Or see this region's nucleotide sequence