Strain Fitness in Pseudomonas simiae WCS417 around PS417_15775

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15765 and PS417_15770 are separated by 83 nucleotidesPS417_15770 and PS417_15775 are separated by 170 nucleotidesPS417_15775 and PS417_15780 are separated by 43 nucleotidesPS417_15780 and PS417_15785 are separated by 75 nucleotides PS417_15765: PS417_15765 - molybdopterin biosynthesis protein B, at 3,456,979 to 3,457,533 _15765 PS417_15770: PS417_15770 - pyridoxine 5'-phosphate oxidase, at 3,457,617 to 3,458,264 _15770 PS417_15775: PS417_15775 - short-chain dehydrogenase, at 3,458,435 to 3,459,610 _15775 PS417_15780: PS417_15780 - membrane protein, at 3,459,654 to 3,460,097 _15780 PS417_15785: PS417_15785 - porin, at 3,460,173 to 3,461,489 _15785 Position (kb) 3458 3459 3460Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3457.461 kb on - strand, within PS417_15765at 3457.594 kb on + strandat 3457.610 kb on + strandat 3457.610 kb on + strandat 3457.610 kb on + strandat 3457.611 kb on - strandat 3457.611 kb on - strandat 3458.021 kb on - strand, within PS417_15770at 3458.221 kb on + strandat 3458.230 kb on + strandat 3458.230 kb on + strandat 3458.230 kb on + strandat 3458.791 kb on - strand, within PS417_15775at 3458.791 kb on - strand, within PS417_15775at 3458.934 kb on + strand, within PS417_15775at 3458.934 kb on + strand, within PS417_15775at 3459.639 kb on + strandat 3459.640 kb on - strandat 3459.640 kb on - strandat 3459.705 kb on - strand, within PS417_15780at 3459.750 kb on + strand, within PS417_15780at 3459.751 kb on - strand, within PS417_15780at 3459.767 kb on + strandat 3459.921 kb on + strand, within PS417_15780at 3459.922 kb on - strand, within PS417_15780at 3460.086 kb on + strandat 3460.086 kb on + strandat 3460.087 kb on - strandat 3460.091 kb on - strandat 3460.193 kb on - strandat 3460.301 kb on - strandat 3460.372 kb on + strand, within PS417_15785at 3460.372 kb on + strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.420 kb on + strand, within PS417_15785at 3460.421 kb on - strand, within PS417_15785at 3460.421 kb on - strand, within PS417_15785at 3460.421 kb on - strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strandat 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strandat 3460.588 kb on + strand, within PS417_15785at 3460.588 kb on + strand, within PS417_15785at 3460.588 kb on + strand, within PS417_15785

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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3,457,461 - PS417_15765 0.87 +0.7
3,457,594 + -0.9
3,457,610 + +0.1
3,457,610 + -0.5
3,457,610 + +0.8
3,457,611 - -0.3
3,457,611 - -0.1
3,458,021 - PS417_15770 0.62 +0.2
3,458,221 + +2.8
3,458,230 + -2.1
3,458,230 + -0.1
3,458,230 + -0.3
3,458,791 - PS417_15775 0.30 -0.1
3,458,791 - PS417_15775 0.30 +0.2
3,458,934 + PS417_15775 0.42 -0.6
3,458,934 + PS417_15775 0.42 +0.2
3,459,639 + +1.0
3,459,640 - +0.5
3,459,640 - +0.5
3,459,705 - PS417_15780 0.11 -0.0
3,459,750 + PS417_15780 0.22 +0.9
3,459,751 - PS417_15780 0.22 -0.1
3,459,767 + -0.8
3,459,921 + PS417_15780 0.60 +0.8
3,459,922 - PS417_15780 0.60 -2.2
3,460,086 + -0.3
3,460,086 + -0.2
3,460,087 - +1.2
3,460,091 - -0.3
3,460,193 - -0.7
3,460,301 - +0.1
3,460,372 + PS417_15785 0.15 +0.2
3,460,372 + PS417_15785 0.15 -0.3
3,460,373 - PS417_15785 0.15 +0.5
3,460,373 - PS417_15785 0.15 -0.0
3,460,373 - PS417_15785 0.15 +0.1
3,460,373 - PS417_15785 0.15 -0.2
3,460,373 - PS417_15785 0.15 -0.2
3,460,420 + PS417_15785 0.19 -0.1
3,460,421 - PS417_15785 0.19 +0.9
3,460,421 - PS417_15785 0.19 -0.2
3,460,421 - PS417_15785 0.19 +0.0
3,460,426 + PS417_15785 0.19 -0.3
3,460,426 + PS417_15785 0.19 +0.2
3,460,426 + PS417_15785 0.19 -0.3
3,460,426 + PS417_15785 0.19 +0.2
3,460,426 + PS417_15785 0.19 +0.2
3,460,426 + PS417_15785 0.19 +0.6
3,460,426 + +1.8
3,460,427 - PS417_15785 0.19 -1.3
3,460,427 - PS417_15785 0.19 +0.6
3,460,427 - PS417_15785 0.19 +0.1
3,460,427 - PS417_15785 0.19 +0.2
3,460,427 - PS417_15785 0.19 -0.8
3,460,427 - PS417_15785 0.19 +0.5
3,460,427 - PS417_15785 0.19 -0.3
3,460,427 - +0.2
3,460,588 + PS417_15785 0.32 -0.6
3,460,588 + PS417_15785 0.32 +0.2
3,460,588 + PS417_15785 0.32 +1.4

Or see this region's nucleotide sequence