Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14485 and PS417_14490 overlap by 4 nucleotides PS417_14490 and PS417_14495 overlap by 4 nucleotides
PS417_14485: PS417_14485 - malto-oligosyltrehalose trehalohydrolase, at 3,164,420 to 3,166,165
_14485
PS417_14490: PS417_14490 - 4-alpha-glucanotransferase, at 3,166,162 to 3,168,246
_14490
PS417_14495: PS417_14495 - maltooligosyl trehalose synthase, at 3,168,243 to 3,170,981
_14495
Position (kb)
3166
3167
3168
3169 Strain fitness (log2 ratio)
-1
0
1 at 3165.304 kb on + strand, within PS417_14485 at 3165.304 kb on + strand, within PS417_14485 at 3165.304 kb on + strand, within PS417_14485 at 3165.361 kb on + strand, within PS417_14485 at 3165.375 kb on + strand, within PS417_14485 at 3165.376 kb on - strand, within PS417_14485 at 3165.463 kb on + strand, within PS417_14485 at 3165.467 kb on + strand, within PS417_14485 at 3165.468 kb on - strand, within PS417_14485 at 3166.577 kb on - strand, within PS417_14490 at 3166.639 kb on + strand, within PS417_14490 at 3166.640 kb on - strand, within PS417_14490 at 3166.826 kb on - strand, within PS417_14490 at 3166.883 kb on + strand, within PS417_14490 at 3166.979 kb on - strand, within PS417_14490 at 3166.979 kb on - strand, within PS417_14490 at 3167.446 kb on - strand, within PS417_14490 at 3167.543 kb on + strand, within PS417_14490 at 3167.544 kb on - strand, within PS417_14490 at 3167.590 kb on + strand, within PS417_14490 at 3168.006 kb on + strand, within PS417_14490 at 3168.006 kb on + strand, within PS417_14490 at 3168.007 kb on - strand, within PS417_14490 at 3168.649 kb on + strand, within PS417_14495 at 3168.650 kb on - strand, within PS417_14495 at 3168.650 kb on - strand, within PS417_14495 at 3168.738 kb on + strand, within PS417_14495 at 3168.750 kb on + strand, within PS417_14495 at 3168.811 kb on + strand, within PS417_14495 at 3168.812 kb on - strand, within PS417_14495 at 3168.864 kb on + strand, within PS417_14495 at 3169.096 kb on + strand, within PS417_14495 at 3169.197 kb on + strand, within PS417_14495
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,165,304 + PS417_14485 0.51 -0.1 3,165,304 + PS417_14485 0.51 +0.2 3,165,304 + PS417_14485 0.51 -1.2 3,165,361 + PS417_14485 0.54 -0.2 3,165,375 + PS417_14485 0.55 +0.7 3,165,376 - PS417_14485 0.55 +0.4 3,165,463 + PS417_14485 0.60 -0.8 3,165,467 + PS417_14485 0.60 +0.2 3,165,468 - PS417_14485 0.60 +0.4 3,166,577 - PS417_14490 0.20 -0.1 3,166,639 + PS417_14490 0.23 -0.4 3,166,640 - PS417_14490 0.23 +0.2 3,166,826 - PS417_14490 0.32 -0.2 3,166,883 + PS417_14490 0.35 +0.8 3,166,979 - PS417_14490 0.39 -0.1 3,166,979 - PS417_14490 0.39 +1.4 3,167,446 - PS417_14490 0.62 -1.4 3,167,543 + PS417_14490 0.66 +0.5 3,167,544 - PS417_14490 0.66 +0.6 3,167,590 + PS417_14490 0.68 +0.1 3,168,006 + PS417_14490 0.88 +1.2 3,168,006 + PS417_14490 0.88 -0.1 3,168,007 - PS417_14490 0.88 -0.3 3,168,649 + PS417_14495 0.15 +1.1 3,168,650 - PS417_14495 0.15 -1.5 3,168,650 - PS417_14495 0.15 -0.2 3,168,738 + PS417_14495 0.18 +0.7 3,168,750 + PS417_14495 0.19 +0.2 3,168,811 + PS417_14495 0.21 -0.9 3,168,812 - PS417_14495 0.21 +0.2 3,168,864 + PS417_14495 0.23 +0.4 3,169,096 + PS417_14495 0.31 -0.3 3,169,197 + PS417_14495 0.35 +0.1
Or see this region's nucleotide sequence