Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11120 and PS417_11125 are separated by 180 nucleotides PS417_11125 and PS417_11130 are separated by 256 nucleotides PS417_11130 and PS417_11135 are separated by 13 nucleotides PS417_11135 and PS417_11140 overlap by 4 nucleotides
PS417_11120: PS417_11120 - UDP pyrophosphate phosphatase, at 2,383,577 to 2,384,446
_11120
PS417_11125: PS417_11125 - hypothetical protein, at 2,384,627 to 2,385,133
_11125
PS417_11130: PS417_11130 - peptide ABC transporter substrate-binding protein, at 2,385,390 to 2,386,946
_11130
PS417_11135: PS417_11135 - peptide ABC transporter, at 2,386,960 to 2,387,901
_11135
PS417_11140: PS417_11140 - peptide ABC transporter permease, at 2,387,898 to 2,388,752
_11140
Position (kb)
2385
2386
2387 Strain fitness (log2 ratio)
-1
0
1 at 2384.449 kb on + strand at 2384.449 kb on + strand at 2384.450 kb on - strand at 2384.526 kb on + strand at 2384.549 kb on - strand at 2384.700 kb on - strand, within PS417_11125 at 2384.708 kb on + strand, within PS417_11125 at 2384.834 kb on + strand, within PS417_11125 at 2384.834 kb on + strand, within PS417_11125 at 2384.835 kb on - strand, within PS417_11125 at 2385.000 kb on - strand, within PS417_11125 at 2385.000 kb on - strand, within PS417_11125 at 2385.326 kb on + strand at 2385.327 kb on - strand at 2385.327 kb on - strand at 2385.327 kb on - strand at 2385.640 kb on - strand, within PS417_11130 at 2385.640 kb on - strand, within PS417_11130 at 2385.987 kb on + strand, within PS417_11130 at 2385.987 kb on + strand, within PS417_11130 at 2385.988 kb on - strand, within PS417_11130 at 2385.992 kb on - strand, within PS417_11130 at 2386.014 kb on + strand, within PS417_11130 at 2386.621 kb on - strand, within PS417_11130 at 2386.642 kb on - strand, within PS417_11130 at 2387.459 kb on - strand, within PS417_11135 at 2387.836 kb on + strand at 2387.836 kb on + strand at 2387.837 kb on - strand at 2387.837 kb on - strand at 2387.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,384,449 + -1.6 2,384,449 + -0.1 2,384,450 - +0.4 2,384,526 + -1.6 2,384,549 - +0.8 2,384,700 - PS417_11125 0.14 +0.0 2,384,708 + PS417_11125 0.16 +0.6 2,384,834 + PS417_11125 0.41 -0.6 2,384,834 + PS417_11125 0.41 +1.7 2,384,835 - PS417_11125 0.41 +0.1 2,385,000 - PS417_11125 0.74 +0.6 2,385,000 - PS417_11125 0.74 +0.4 2,385,326 + +0.2 2,385,327 - +0.2 2,385,327 - +0.2 2,385,327 - -0.2 2,385,640 - PS417_11130 0.16 +0.9 2,385,640 - PS417_11130 0.16 +0.4 2,385,987 + PS417_11130 0.38 +0.1 2,385,987 + PS417_11130 0.38 +0.4 2,385,988 - PS417_11130 0.38 +1.4 2,385,992 - PS417_11130 0.39 +0.5 2,386,014 + PS417_11130 0.40 -0.9 2,386,621 - PS417_11130 0.79 +0.7 2,386,642 - PS417_11130 0.80 +0.5 2,387,459 - PS417_11135 0.53 -0.6 2,387,836 + +0.3 2,387,836 + +0.4 2,387,837 - -1.1 2,387,837 - +0.1 2,387,898 - -0.0
Or see this region's nucleotide sequence