Strain Fitness in Pseudomonas simiae WCS417 around PS417_11130

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11120 and PS417_11125 are separated by 180 nucleotidesPS417_11125 and PS417_11130 are separated by 256 nucleotidesPS417_11130 and PS417_11135 are separated by 13 nucleotidesPS417_11135 and PS417_11140 overlap by 4 nucleotides PS417_11120: PS417_11120 - UDP pyrophosphate phosphatase, at 2,383,577 to 2,384,446 _11120 PS417_11125: PS417_11125 - hypothetical protein, at 2,384,627 to 2,385,133 _11125 PS417_11130: PS417_11130 - peptide ABC transporter substrate-binding protein, at 2,385,390 to 2,386,946 _11130 PS417_11135: PS417_11135 - peptide ABC transporter, at 2,386,960 to 2,387,901 _11135 PS417_11140: PS417_11140 - peptide ABC transporter permease, at 2,387,898 to 2,388,752 _11140 Position (kb) 2385 2386 2387Strain fitness (log2 ratio) -1 0 1at 2384.449 kb on + strandat 2384.449 kb on + strandat 2384.450 kb on - strandat 2384.526 kb on + strandat 2384.549 kb on - strandat 2384.700 kb on - strand, within PS417_11125at 2384.708 kb on + strand, within PS417_11125at 2384.834 kb on + strand, within PS417_11125at 2384.834 kb on + strand, within PS417_11125at 2384.835 kb on - strand, within PS417_11125at 2385.000 kb on - strand, within PS417_11125at 2385.000 kb on - strand, within PS417_11125at 2385.326 kb on + strandat 2385.327 kb on - strandat 2385.327 kb on - strandat 2385.327 kb on - strandat 2385.640 kb on - strand, within PS417_11130at 2385.640 kb on - strand, within PS417_11130at 2385.987 kb on + strand, within PS417_11130at 2385.987 kb on + strand, within PS417_11130at 2385.988 kb on - strand, within PS417_11130at 2385.992 kb on - strand, within PS417_11130at 2386.014 kb on + strand, within PS417_11130at 2386.621 kb on - strand, within PS417_11130at 2386.642 kb on - strand, within PS417_11130at 2387.459 kb on - strand, within PS417_11135at 2387.836 kb on + strandat 2387.836 kb on + strandat 2387.837 kb on - strandat 2387.837 kb on - strandat 2387.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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2,384,449 + -1.6
2,384,449 + -0.1
2,384,450 - +0.4
2,384,526 + -1.6
2,384,549 - +0.8
2,384,700 - PS417_11125 0.14 +0.0
2,384,708 + PS417_11125 0.16 +0.6
2,384,834 + PS417_11125 0.41 -0.6
2,384,834 + PS417_11125 0.41 +1.7
2,384,835 - PS417_11125 0.41 +0.1
2,385,000 - PS417_11125 0.74 +0.6
2,385,000 - PS417_11125 0.74 +0.4
2,385,326 + +0.2
2,385,327 - +0.2
2,385,327 - +0.2
2,385,327 - -0.2
2,385,640 - PS417_11130 0.16 +0.9
2,385,640 - PS417_11130 0.16 +0.4
2,385,987 + PS417_11130 0.38 +0.1
2,385,987 + PS417_11130 0.38 +0.4
2,385,988 - PS417_11130 0.38 +1.4
2,385,992 - PS417_11130 0.39 +0.5
2,386,014 + PS417_11130 0.40 -0.9
2,386,621 - PS417_11130 0.79 +0.7
2,386,642 - PS417_11130 0.80 +0.5
2,387,459 - PS417_11135 0.53 -0.6
2,387,836 + +0.3
2,387,836 + +0.4
2,387,837 - -1.1
2,387,837 - +0.1
2,387,898 - -0.0

Or see this region's nucleotide sequence