Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01075 and PS417_01080 overlap by 1 nucleotides PS417_01080 and PS417_01085 are separated by 24 nucleotides
PS417_01075: PS417_01075 - N5,N10-methylene tetrahydromethanopterin reductase, at 235,175 to 236,527
_01075
PS417_01080: PS417_01080 - acyl-CoA dehydrogenase, at 236,527 to 237,720
_01080
PS417_01085: PS417_01085 - monooxygenase, at 237,745 to 238,986
_01085
Position (kb) 236
237
238 Strain fitness (log2 ratio) -2
-1
0
1
2 at 235.533 kb on + strand, within PS417_01075 at 235.557 kb on + strand, within PS417_01075 at 235.621 kb on - strand, within PS417_01075 at 235.621 kb on - strand, within PS417_01075 at 235.908 kb on + strand, within PS417_01075 at 235.957 kb on - strand, within PS417_01075 at 236.020 kb on - strand, within PS417_01075 at 236.020 kb on - strand, within PS417_01075 at 236.031 kb on - strand, within PS417_01075 at 236.031 kb on - strand, within PS417_01075 at 236.031 kb on - strand, within PS417_01075 at 236.188 kb on - strand, within PS417_01075 at 236.199 kb on + strand, within PS417_01075 at 236.200 kb on - strand, within PS417_01075 at 236.428 kb on - strand at 236.428 kb on - strand at 236.568 kb on - strand at 236.570 kb on + strand at 236.570 kb on + strand at 236.571 kb on - strand at 236.588 kb on + strand at 236.589 kb on - strand at 237.031 kb on - strand, within PS417_01080 at 237.031 kb on - strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.254 kb on + strand, within PS417_01080 at 237.438 kb on - strand, within PS417_01080 at 237.838 kb on + strand at 238.103 kb on + strand, within PS417_01085 at 238.103 kb on + strand, within PS417_01085 at 238.103 kb on + strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.163 kb on - strand, within PS417_01085 at 238.429 kb on + strand at 238.475 kb on + strand, within PS417_01085 at 238.475 kb on + strand, within PS417_01085 at 238.499 kb on + strand, within PS417_01085 at 238.499 kb on + strand at 238.499 kb on + strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 235,533 + PS417_01075 0.26 -0.3 235,557 + PS417_01075 0.28 +0.0 235,621 - PS417_01075 0.33 +0.9 235,621 - PS417_01075 0.33 +0.3 235,908 + PS417_01075 0.54 +1.3 235,957 - PS417_01075 0.58 -0.1 236,020 - PS417_01075 0.62 +1.3 236,020 - PS417_01075 0.62 -0.1 236,031 - PS417_01075 0.63 -0.3 236,031 - PS417_01075 0.63 +0.4 236,031 - PS417_01075 0.63 +0.5 236,188 - PS417_01075 0.75 +0.5 236,199 + PS417_01075 0.76 +1.3 236,200 - PS417_01075 0.76 +0.0 236,428 - -0.4 236,428 - -1.8 236,568 - +0.1 236,570 + -0.4 236,570 + -0.9 236,571 - -0.9 236,588 + +0.2 236,589 - +0.1 237,031 - PS417_01080 0.42 -0.4 237,031 - PS417_01080 0.42 -0.8 237,236 + PS417_01080 0.59 +0.3 237,236 + PS417_01080 0.59 -1.8 237,236 + PS417_01080 0.59 -0.1 237,254 + PS417_01080 0.61 -0.1 237,438 - PS417_01080 0.76 -0.7 237,838 + -0.2 238,103 + PS417_01085 0.29 +0.2 238,103 + PS417_01085 0.29 -0.1 238,103 + PS417_01085 0.29 +0.4 238,104 - PS417_01085 0.29 -0.7 238,104 - PS417_01085 0.29 -0.8 238,104 - PS417_01085 0.29 -0.1 238,104 - PS417_01085 0.29 +1.3 238,163 - PS417_01085 0.34 +0.3 238,429 + +2.3 238,475 + PS417_01085 0.59 +0.3 238,475 + PS417_01085 0.59 +0.1 238,499 + PS417_01085 0.61 -0.1 238,499 + +0.3 238,499 + PS417_01085 0.61 -0.2 238,500 - PS417_01085 0.61 -0.4 238,500 - PS417_01085 0.61 -1.1
Or see this region's nucleotide sequence