Strain Fitness in Pseudomonas simiae WCS417 around PS417_10855
Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Tetracycline 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,319,744 | - | PS417_10850 | 0.63 | -0.6 | |
2,320,039 | + | -0.0 | |||
2,320,040 | - | +0.1 | |||
2,320,048 | + | -3.2 | |||
2,320,049 | - | -1.7 | |||
2,320,132 | - | -1.9 | |||
2,320,246 | + | PS417_10855 | 0.15 | -0.3 | |
2,320,247 | - | PS417_10855 | 0.15 | -0.9 | |
2,320,247 | - | PS417_10855 | 0.15 | -0.4 | |
2,320,468 | - | PS417_10855 | 0.44 | -1.6 | |
2,320,468 | - | PS417_10855 | 0.44 | -0.5 | |
2,320,539 | + | PS417_10855 | 0.54 | -0.2 | |
2,320,540 | - | PS417_10855 | 0.54 | -0.7 | |
2,320,885 | + | +0.2 | |||
2,320,885 | + | -0.7 | |||
2,320,953 | + | -0.2 | |||
2,320,953 | + | -0.5 | |||
2,320,953 | + | +0.6 | |||
2,320,953 | + | -0.8 | |||
2,321,040 | - | PS417_10860 | 0.11 | -1.9 | |
2,321,395 | + | PS417_10860 | 0.57 | +0.7 | |
2,321,600 | - | PS417_10860 | 0.83 | -0.2 | |
2,321,719 | + | +0.2 | |||
2,321,720 | - | -0.9 |
Or see this region's nucleotide sequence