Strain Fitness in Pseudomonas simiae WCS417 around PS417_10855

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10850 and PS417_10855 overlap by 4 nucleotidesPS417_10855 and PS417_10860 are separated by 64 nucleotides PS417_10850: PS417_10850 - histidine kinase, at 2,319,078 to 2,320,139 _10850 PS417_10855: PS417_10855 - chemotaxis protein CheY, at 2,320,136 to 2,320,885 _10855 PS417_10860: PS417_10860 - flagellar basal body rod protein FlgG, at 2,320,950 to 2,321,735 _10860 Position (kb) 2320 2321Strain fitness (log2 ratio) -3 -2 -1 0 1at 2319.744 kb on - strand, within PS417_10850at 2320.039 kb on + strandat 2320.040 kb on - strandat 2320.048 kb on + strandat 2320.049 kb on - strandat 2320.132 kb on - strandat 2320.246 kb on + strand, within PS417_10855at 2320.247 kb on - strand, within PS417_10855at 2320.247 kb on - strand, within PS417_10855at 2320.468 kb on - strand, within PS417_10855at 2320.468 kb on - strand, within PS417_10855at 2320.539 kb on + strand, within PS417_10855at 2320.540 kb on - strand, within PS417_10855at 2320.885 kb on + strandat 2320.885 kb on + strandat 2320.953 kb on + strandat 2320.953 kb on + strandat 2320.953 kb on + strandat 2320.953 kb on + strandat 2321.040 kb on - strand, within PS417_10860at 2321.395 kb on + strand, within PS417_10860at 2321.600 kb on - strand, within PS417_10860at 2321.719 kb on + strandat 2321.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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2,319,744 - PS417_10850 0.63 -0.6
2,320,039 + -0.0
2,320,040 - +0.1
2,320,048 + -3.2
2,320,049 - -1.7
2,320,132 - -1.9
2,320,246 + PS417_10855 0.15 -0.3
2,320,247 - PS417_10855 0.15 -0.9
2,320,247 - PS417_10855 0.15 -0.4
2,320,468 - PS417_10855 0.44 -1.6
2,320,468 - PS417_10855 0.44 -0.5
2,320,539 + PS417_10855 0.54 -0.2
2,320,540 - PS417_10855 0.54 -0.7
2,320,885 + +0.2
2,320,885 + -0.7
2,320,953 + -0.2
2,320,953 + -0.5
2,320,953 + +0.6
2,320,953 + -0.8
2,321,040 - PS417_10860 0.11 -1.9
2,321,395 + PS417_10860 0.57 +0.7
2,321,600 - PS417_10860 0.83 -0.2
2,321,719 + +0.2
2,321,720 - -0.9

Or see this region's nucleotide sequence