Strain Fitness in Pseudomonas simiae WCS417 around PS417_08240

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08235 and PS417_08240 are separated by 2 nucleotidesPS417_08240 and PS417_08245 are separated by 12 nucleotides PS417_08235: PS417_08235 - CDP-glucose 4,6-dehydratase, at 1,804,587 to 1,805,672 _08235 PS417_08240: PS417_08240 - glucose-1-phosphate cytidylyltransferase, at 1,805,675 to 1,806,448 _08240 PS417_08245: PS417_08245 - CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase, at 1,806,461 to 1,807,450 _08245 Position (kb) 1805 1806 1807Strain fitness (log2 ratio) -1 0 1 2 3 4at 1804.772 kb on - strand, within PS417_08235at 1805.053 kb on - strand, within PS417_08235at 1805.195 kb on - strand, within PS417_08235at 1805.354 kb on - strand, within PS417_08235at 1805.673 kb on - strandat 1805.753 kb on - strand, within PS417_08240at 1806.069 kb on + strand, within PS417_08240at 1806.567 kb on + strandat 1806.954 kb on - strand, within PS417_08245at 1807.354 kb on - strandat 1807.367 kb on - strandat 1807.444 kb on + strandat 1807.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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1,804,772 - PS417_08235 0.17 +3.8
1,805,053 - PS417_08235 0.43 +3.2
1,805,195 - PS417_08235 0.56 +2.9
1,805,354 - PS417_08235 0.71 +1.3
1,805,673 - +1.9
1,805,753 - PS417_08240 0.10 +2.4
1,806,069 + PS417_08240 0.51 +2.7
1,806,567 + +0.6
1,806,954 - PS417_08245 0.50 +3.5
1,807,354 - +3.6
1,807,367 - +2.5
1,807,444 + +2.3
1,807,445 - +2.0

Or see this region's nucleotide sequence