Strain Fitness in Pseudomonas simiae WCS417 around PS417_05515

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05505 and PS417_05510 overlap by 4 nucleotidesPS417_05510 and PS417_05515 are separated by 31 nucleotidesPS417_05515 and PS417_05520 overlap by 1 nucleotides PS417_05505: PS417_05505 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 1,237,948 to 1,239,342 _05505 PS417_05510: PS417_05510 - alpha/beta hydrolase, at 1,239,339 to 1,240,289 _05510 PS417_05515: PS417_05515 - hypothetical protein, at 1,240,321 to 1,241,445 _05515 PS417_05520: PS417_05520 - histidine kinase, at 1,241,445 to 1,243,214 _05520 Position (kb) 1240 1241 1242Strain fitness (log2 ratio) -3 -2 -1 0 1at 1239.350 kb on - strandat 1239.495 kb on + strand, within PS417_05510at 1239.496 kb on - strand, within PS417_05510at 1239.657 kb on + strand, within PS417_05510at 1239.657 kb on + strand, within PS417_05510at 1239.657 kb on + strand, within PS417_05510at 1239.657 kb on + strand, within PS417_05510at 1239.657 kb on + strand, within PS417_05510at 1239.658 kb on - strand, within PS417_05510at 1239.703 kb on - strand, within PS417_05510at 1239.720 kb on + strand, within PS417_05510at 1239.882 kb on - strand, within PS417_05510at 1240.035 kb on + strand, within PS417_05510at 1240.414 kb on + strandat 1240.414 kb on + strandat 1240.414 kb on + strandat 1240.415 kb on - strandat 1240.415 kb on - strandat 1240.609 kb on + strand, within PS417_05515at 1240.842 kb on - strand, within PS417_05515at 1240.873 kb on + strand, within PS417_05515at 1240.873 kb on + strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1241.099 kb on - strand, within PS417_05515at 1241.201 kb on - strand, within PS417_05515at 1241.201 kb on - strand, within PS417_05515at 1241.244 kb on + strand, within PS417_05515at 1241.244 kb on + strand, within PS417_05515at 1241.245 kb on - strand, within PS417_05515at 1241.245 kb on - strand, within PS417_05515at 1241.245 kb on - strand, within PS417_05515at 1241.257 kb on - strand, within PS417_05515at 1241.266 kb on + strand, within PS417_05515at 1241.266 kb on + strand, within PS417_05515at 1241.266 kb on + strand, within PS417_05515at 1241.267 kb on - strandat 1241.296 kb on - strand, within PS417_05515at 1241.296 kb on - strand, within PS417_05515at 1241.301 kb on - strand, within PS417_05515at 1241.301 kb on - strand, within PS417_05515at 1241.301 kb on - strand, within PS417_05515at 1241.382 kb on - strandat 1241.684 kb on + strand, within PS417_05520at 1241.685 kb on - strand, within PS417_05520at 1241.976 kb on + strand, within PS417_05520at 1242.036 kb on + strand, within PS417_05520at 1242.036 kb on + strand, within PS417_05520at 1242.183 kb on + strand, within PS417_05520at 1242.184 kb on - strand, within PS417_05520at 1242.184 kb on - strand, within PS417_05520at 1242.184 kb on - strand, within PS417_05520

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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1,239,350 - -1.8
1,239,495 + PS417_05510 0.16 -2.2
1,239,496 - PS417_05510 0.17 -1.5
1,239,657 + PS417_05510 0.33 -3.6
1,239,657 + PS417_05510 0.33 -1.8
1,239,657 + PS417_05510 0.33 -1.4
1,239,657 + PS417_05510 0.33 -3.1
1,239,657 + PS417_05510 0.33 -3.4
1,239,658 - PS417_05510 0.34 -2.7
1,239,703 - PS417_05510 0.38 -2.0
1,239,720 + PS417_05510 0.40 -1.9
1,239,882 - PS417_05510 0.57 -1.9
1,240,035 + PS417_05510 0.73 -3.0
1,240,414 + -1.6
1,240,414 + -1.7
1,240,414 + -1.8
1,240,415 - -1.6
1,240,415 - +0.3
1,240,609 + PS417_05515 0.26 -1.1
1,240,842 - PS417_05515 0.46 -3.3
1,240,873 + PS417_05515 0.49 -0.5
1,240,873 + PS417_05515 0.49 -1.6
1,240,874 - PS417_05515 0.49 -1.4
1,240,874 - PS417_05515 0.49 -2.6
1,240,874 - PS417_05515 0.49 -3.7
1,240,874 - PS417_05515 0.49 -1.9
1,240,874 - PS417_05515 0.49 -1.1
1,240,874 - PS417_05515 0.49 -2.1
1,241,099 - PS417_05515 0.69 -1.0
1,241,201 - PS417_05515 0.78 -0.8
1,241,201 - PS417_05515 0.78 -0.7
1,241,244 + PS417_05515 0.82 -2.2
1,241,244 + PS417_05515 0.82 -1.9
1,241,245 - PS417_05515 0.82 -1.1
1,241,245 - PS417_05515 0.82 -0.6
1,241,245 - PS417_05515 0.82 -0.6
1,241,257 - PS417_05515 0.83 -1.1
1,241,266 + PS417_05515 0.84 -2.1
1,241,266 + PS417_05515 0.84 -1.5
1,241,266 + PS417_05515 0.84 -1.4
1,241,267 - -0.7
1,241,296 - PS417_05515 0.87 -1.3
1,241,296 - PS417_05515 0.87 -2.2
1,241,301 - PS417_05515 0.87 -2.3
1,241,301 - PS417_05515 0.87 -1.1
1,241,301 - PS417_05515 0.87 -1.1
1,241,382 - -0.5
1,241,684 + PS417_05520 0.14 -2.9
1,241,685 - PS417_05520 0.14 -3.4
1,241,976 + PS417_05520 0.30 -3.5
1,242,036 + PS417_05520 0.33 -1.2
1,242,036 + PS417_05520 0.33 -0.7
1,242,183 + PS417_05520 0.42 -3.1
1,242,184 - PS417_05520 0.42 -0.7
1,242,184 - PS417_05520 0.42 -2.8
1,242,184 - PS417_05520 0.42 -2.5

Or see this region's nucleotide sequence