Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4628 and Echvi_4629 are separated by 132 nucleotides Echvi_4629 and Echvi_4630 are separated by 119 nucleotides Echvi_4630 and Echvi_4631 are separated by 70 nucleotides
Echvi_4628: Echvi_4628 - adenylosuccinate synthase, at 5,537,833 to 5,539,098
_4628
Echvi_4629: Echvi_4629 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 5,539,231 to 5,539,575
_4629
Echvi_4630: Echvi_4630 - Fe2+/Zn2+ uptake regulation proteins, at 5,539,695 to 5,540,162
_4630
Echvi_4631: Echvi_4631 - (p)ppGpp synthetase, RelA/SpoT family, at 5,540,233 to 5,542,455
_4631
Position (kb) 5539
5540
5541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5539.108 kb on - strand at 5539.113 kb on - strand at 5539.113 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.203 kb on + strand at 5539.203 kb on + strand at 5539.203 kb on + strand at 5539.237 kb on + strand at 5539.296 kb on + strand, within Echvi_4629 at 5539.315 kb on + strand, within Echvi_4629 at 5539.315 kb on + strand, within Echvi_4629 at 5539.316 kb on - strand, within Echvi_4629 at 5539.341 kb on - strand, within Echvi_4629 at 5539.341 kb on - strand, within Echvi_4629 at 5539.354 kb on + strand, within Echvi_4629 at 5539.371 kb on + strand, within Echvi_4629 at 5539.411 kb on - strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.435 kb on - strand, within Echvi_4629 at 5539.437 kb on + strand, within Echvi_4629 at 5539.437 kb on + strand, within Echvi_4629 at 5539.438 kb on - strand, within Echvi_4629 at 5539.459 kb on + strand, within Echvi_4629 at 5539.563 kb on - strand at 5539.563 kb on - strand at 5539.563 kb on - strand at 5539.575 kb on + strand at 5539.575 kb on + strand at 5540.190 kb on + strand at 5540.219 kb on - strand at 5540.230 kb on - strand at 5540.230 kb on - strand at 5540.319 kb on - strand at 5540.359 kb on + strand at 5540.637 kb on + strand, within Echvi_4631 at 5541.093 kb on + strand, within Echvi_4631 at 5541.093 kb on + strand, within Echvi_4631 at 5541.094 kb on - strand, within Echvi_4631
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,539,108 - +2.9 5,539,113 - +1.6 5,539,113 - +3.3 5,539,117 - +0.9 5,539,117 - +0.3 5,539,117 - +0.4 5,539,117 - +1.0 5,539,117 - +1.1 5,539,117 - +0.9 5,539,117 - +0.8 5,539,117 - +1.3 5,539,117 - +1.4 5,539,117 - +2.2 5,539,117 - +0.8 5,539,117 - +1.0 5,539,119 - -1.0 5,539,119 - +0.8 5,539,119 - +0.2 5,539,119 - -0.3 5,539,119 - -1.0 5,539,203 + +0.1 5,539,203 + +1.1 5,539,203 + +0.7 5,539,237 + +0.4 5,539,296 + Echvi_4629 0.19 +0.5 5,539,315 + Echvi_4629 0.24 -0.5 5,539,315 + Echvi_4629 0.24 -0.8 5,539,316 - Echvi_4629 0.25 -1.1 5,539,341 - Echvi_4629 0.32 -1.3 5,539,341 - Echvi_4629 0.32 +0.2 5,539,354 + Echvi_4629 0.36 +1.3 5,539,371 + Echvi_4629 0.41 +0.3 5,539,411 - Echvi_4629 0.52 +0.5 5,539,412 + Echvi_4629 0.52 +0.7 5,539,412 + Echvi_4629 0.52 +0.5 5,539,412 + Echvi_4629 0.52 +1.1 5,539,413 - Echvi_4629 0.53 -1.1 5,539,413 - Echvi_4629 0.53 +0.0 5,539,413 - Echvi_4629 0.53 -1.1 5,539,413 - Echvi_4629 0.53 +0.2 5,539,435 - Echvi_4629 0.59 -0.1 5,539,437 + Echvi_4629 0.60 -1.0 5,539,437 + Echvi_4629 0.60 -0.8 5,539,438 - Echvi_4629 0.60 -1.6 5,539,459 + Echvi_4629 0.66 +1.3 5,539,563 - +0.4 5,539,563 - +0.1 5,539,563 - +0.6 5,539,575 + +0.9 5,539,575 + +0.4 5,540,190 + -0.3 5,540,219 - -1.9 5,540,230 - -1.5 5,540,230 - -3.5 5,540,319 - +1.9 5,540,359 + +1.1 5,540,637 + Echvi_4631 0.18 -1.1 5,541,093 + Echvi_4631 0.39 -2.9 5,541,093 + Echvi_4631 0.39 -2.9 5,541,094 - Echvi_4631 0.39 -1.8
Or see this region's nucleotide sequence