Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2425 and Echvi_2426 overlap by 4 nucleotides Echvi_2426 and Echvi_2427 are separated by 228 nucleotides Echvi_2427 and Echvi_2428 are separated by 63 nucleotides Echvi_2428 and Echvi_2429 are separated by 88 nucleotides
Echvi_2425: Echvi_2425 - hypothetical protein, at 2,876,377 to 2,877,207
_2425
Echvi_2426: Echvi_2426 - Uncharacterized protein conserved in bacteria, at 2,877,204 to 2,877,968
_2426
Echvi_2427: Echvi_2427 - ATP-dependent metalloprotease FtsH, at 2,878,197 to 2,880,242
_2427
Echvi_2428: Echvi_2428 - iojap-like ribosome-associated protein, at 2,880,306 to 2,880,653
_2428
Echvi_2429: Echvi_2429 - birA, biotin-[acetyl-CoA-carboxylase] ligase region, at 2,880,742 to 2,881,500
_2429
Position (kb)
2878
2879
2880
2881 Strain fitness (log2 ratio)
-1
0
1 at 2878.126 kb on - strand at 2878.185 kb on + strand at 2878.185 kb on + strand at 2878.291 kb on - strand at 2880.369 kb on - strand, within Echvi_2428 at 2880.404 kb on - strand, within Echvi_2428 at 2880.404 kb on - strand, within Echvi_2428 at 2880.622 kb on - strand at 2880.633 kb on - strand at 2880.673 kb on - strand at 2880.704 kb on - strand at 2880.719 kb on - strand at 2880.729 kb on - strand at 2880.733 kb on - strand at 2880.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,878,126 - +0.3 2,878,185 + -0.4 2,878,185 + +1.7 2,878,291 - +0.9 2,880,369 - Echvi_2428 0.18 +1.5 2,880,404 - Echvi_2428 0.28 +0.0 2,880,404 - Echvi_2428 0.28 +0.3 2,880,622 - +0.6 2,880,633 - -1.1 2,880,673 - +0.5 2,880,704 - -1.4 2,880,719 - +1.7 2,880,729 - +0.9 2,880,733 - -0.8 2,880,790 + +0.2
Or see this region's nucleotide sequence