Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2427

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2425 and Echvi_2426 overlap by 4 nucleotidesEchvi_2426 and Echvi_2427 are separated by 228 nucleotidesEchvi_2427 and Echvi_2428 are separated by 63 nucleotidesEchvi_2428 and Echvi_2429 are separated by 88 nucleotides Echvi_2425: Echvi_2425 - hypothetical protein, at 2,876,377 to 2,877,207 _2425 Echvi_2426: Echvi_2426 - Uncharacterized protein conserved in bacteria, at 2,877,204 to 2,877,968 _2426 Echvi_2427: Echvi_2427 - ATP-dependent metalloprotease FtsH, at 2,878,197 to 2,880,242 _2427 Echvi_2428: Echvi_2428 - iojap-like ribosome-associated protein, at 2,880,306 to 2,880,653 _2428 Echvi_2429: Echvi_2429 - birA, biotin-[acetyl-CoA-carboxylase] ligase region, at 2,880,742 to 2,881,500 _2429 Position (kb) 2878 2879 2880 2881Strain fitness (log2 ratio) -1 0 1at 2878.126 kb on - strandat 2878.185 kb on + strandat 2878.185 kb on + strandat 2878.291 kb on - strandat 2880.369 kb on - strand, within Echvi_2428at 2880.404 kb on - strand, within Echvi_2428at 2880.404 kb on - strand, within Echvi_2428at 2880.622 kb on - strandat 2880.633 kb on - strandat 2880.673 kb on - strandat 2880.704 kb on - strandat 2880.719 kb on - strandat 2880.729 kb on - strandat 2880.733 kb on - strandat 2880.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,878,126 - +0.3
2,878,185 + -0.4
2,878,185 + +1.7
2,878,291 - +0.9
2,880,369 - Echvi_2428 0.18 +1.5
2,880,404 - Echvi_2428 0.28 +0.0
2,880,404 - Echvi_2428 0.28 +0.3
2,880,622 - +0.6
2,880,633 - -1.1
2,880,673 - +0.5
2,880,704 - -1.4
2,880,719 - +1.7
2,880,729 - +0.9
2,880,733 - -0.8
2,880,790 + +0.2

Or see this region's nucleotide sequence