Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2375

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2373 and Echvi_2374 are separated by 40 nucleotidesEchvi_2374 and Echvi_2375 overlap by 8 nucleotidesEchvi_2375 and Echvi_2376 are separated by 22 nucleotides Echvi_2373: Echvi_2373 - hypothetical protein, at 2,810,535 to 2,811,389 _2373 Echvi_2374: Echvi_2374 - hypothetical protein, at 2,811,430 to 2,811,966 _2374 Echvi_2375: Echvi_2375 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,811,959 to 2,813,260 _2375 Echvi_2376: Echvi_2376 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 2,813,283 to 2,814,743 _2376 Position (kb) 2811 2812 2813 2814Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2810.968 kb on - strand, within Echvi_2373at 2810.968 kb on - strand, within Echvi_2373at 2811.066 kb on - strand, within Echvi_2373at 2811.260 kb on - strand, within Echvi_2373at 2811.365 kb on + strandat 2811.366 kb on - strandat 2811.425 kb on + strandat 2813.261 kb on - strandat 2813.261 kb on - strandat 2813.277 kb on - strandat 2813.345 kb on - strandat 2813.345 kb on - strandat 2813.409 kb on - strandat 2813.443 kb on - strand, within Echvi_2376at 2813.448 kb on + strand, within Echvi_2376at 2813.448 kb on + strand, within Echvi_2376at 2813.612 kb on - strand, within Echvi_2376at 2813.612 kb on - strand, within Echvi_2376at 2813.640 kb on + strand, within Echvi_2376at 2813.647 kb on - strand, within Echvi_2376at 2813.697 kb on - strand, within Echvi_2376at 2813.759 kb on - strand, within Echvi_2376at 2813.759 kb on - strand, within Echvi_2376at 2813.774 kb on - strand, within Echvi_2376at 2813.774 kb on - strand, within Echvi_2376at 2813.774 kb on - strand, within Echvi_2376at 2813.797 kb on - strand, within Echvi_2376at 2813.799 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.883 kb on - strand, within Echvi_2376at 2813.952 kb on + strand, within Echvi_2376at 2813.953 kb on - strand, within Echvi_2376at 2814.038 kb on - strand, within Echvi_2376at 2814.196 kb on - strand, within Echvi_2376

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,810,968 - Echvi_2373 0.51 -0.1
2,810,968 - Echvi_2373 0.51 +0.9
2,811,066 - Echvi_2373 0.62 +2.1
2,811,260 - Echvi_2373 0.85 +0.6
2,811,365 + +0.5
2,811,366 - +2.9
2,811,425 + +2.0
2,813,261 - +0.2
2,813,261 - -0.7
2,813,277 - -0.7
2,813,345 - -0.7
2,813,345 - +0.7
2,813,409 - +1.2
2,813,443 - Echvi_2376 0.11 -2.8
2,813,448 + Echvi_2376 0.11 +0.0
2,813,448 + Echvi_2376 0.11 -0.8
2,813,612 - Echvi_2376 0.23 +1.6
2,813,612 - Echvi_2376 0.23 +0.2
2,813,640 + Echvi_2376 0.24 +0.6
2,813,647 - Echvi_2376 0.25 +2.2
2,813,697 - Echvi_2376 0.28 +1.1
2,813,759 - Echvi_2376 0.33 +0.8
2,813,759 - Echvi_2376 0.33 +0.2
2,813,774 - Echvi_2376 0.34 +0.6
2,813,774 - Echvi_2376 0.34 -0.5
2,813,774 - Echvi_2376 0.34 +0.7
2,813,797 - Echvi_2376 0.35 +2.2
2,813,799 - Echvi_2376 0.35 +0.2
2,813,867 - Echvi_2376 0.40 -0.9
2,813,867 - Echvi_2376 0.40 +0.6
2,813,867 - Echvi_2376 0.40 -0.5
2,813,867 - Echvi_2376 0.40 +0.7
2,813,867 - Echvi_2376 0.40 +0.5
2,813,867 - Echvi_2376 0.40 +1.2
2,813,867 - Echvi_2376 0.40 +0.0
2,813,867 - Echvi_2376 0.40 -0.8
2,813,883 - Echvi_2376 0.41 +0.5
2,813,952 + Echvi_2376 0.46 -1.0
2,813,953 - Echvi_2376 0.46 +0.2
2,814,038 - Echvi_2376 0.52 +0.7
2,814,196 - Echvi_2376 0.62 -0.2

Or see this region's nucleotide sequence