Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1525 and Echvi_1526 overlap by 41 nucleotides Echvi_1526 and Echvi_1527 are separated by 126 nucleotides Echvi_1527 and Echvi_1528 are separated by 30 nucleotides Echvi_1528 and Echvi_1529 are separated by 1 nucleotides
Echvi_1525: Echvi_1525 - hypothetical protein, at 1,750,206 to 1,751,612
_1525
Echvi_1526: Echvi_1526 - Glycogen synthase, at 1,751,572 to 1,752,387
_1526
Echvi_1527: Echvi_1527 - pantoate--beta-alanine ligase, at 1,752,514 to 1,753,371
_1527
Echvi_1528: Echvi_1528 - L-aspartate-alpha-decarboxylase, at 1,753,402 to 1,753,749
_1528
Echvi_1529: Echvi_1529 - conserved hypothetical protein, at 1,753,751 to 1,754,767
_1529
Position (kb)
1752
1753
1754 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1751.547 kb on - strand at 1751.547 kb on - strand at 1751.551 kb on - strand at 1751.557 kb on - strand at 1751.574 kb on - strand at 1752.431 kb on - strand at 1752.501 kb on + strand at 1752.501 kb on + strand at 1752.501 kb on + strand at 1752.501 kb on + strand at 1752.510 kb on + strand at 1752.510 kb on + strand at 1753.765 kb on - strand at 1753.765 kb on - strand at 1753.765 kb on - strand at 1753.824 kb on + strand at 1753.825 kb on - strand at 1753.825 kb on - strand at 1754.027 kb on - strand, within Echvi_1529 at 1754.098 kb on + strand, within Echvi_1529 at 1754.197 kb on - strand, within Echvi_1529 at 1754.252 kb on + strand, within Echvi_1529 at 1754.252 kb on + strand, within Echvi_1529 at 1754.252 kb on + strand, within Echvi_1529 at 1754.252 kb on + strand, within Echvi_1529 at 1754.252 kb on + strand, within Echvi_1529 at 1754.253 kb on - strand, within Echvi_1529 at 1754.253 kb on - strand, within Echvi_1529 at 1754.253 kb on - strand, within Echvi_1529 at 1754.301 kb on - strand, within Echvi_1529
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,751,547 - +1.8 1,751,547 - +0.6 1,751,551 - +1.0 1,751,557 - -0.9 1,751,574 - +0.9 1,752,431 - +1.2 1,752,501 + -0.8 1,752,501 + -0.3 1,752,501 + +1.3 1,752,501 + -1.4 1,752,510 + -0.4 1,752,510 + +0.0 1,753,765 - -0.2 1,753,765 - +2.1 1,753,765 - -0.3 1,753,824 + -0.1 1,753,825 - +0.9 1,753,825 - +0.2 1,754,027 - Echvi_1529 0.27 -0.5 1,754,098 + Echvi_1529 0.34 +1.3 1,754,197 - Echvi_1529 0.44 -1.0 1,754,252 + Echvi_1529 0.49 +0.5 1,754,252 + Echvi_1529 0.49 +1.7 1,754,252 + Echvi_1529 0.49 +1.8 1,754,252 + Echvi_1529 0.49 -0.1 1,754,252 + Echvi_1529 0.49 +3.2 1,754,253 - Echvi_1529 0.49 -0.2 1,754,253 - Echvi_1529 0.49 +0.6 1,754,253 - Echvi_1529 0.49 +0.3 1,754,301 - Echvi_1529 0.54 +0.5
Or see this region's nucleotide sequence