Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1192

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1191 and Echvi_1192 are separated by 129 nucleotidesEchvi_1192 and Echvi_1193 are separated by 93 nucleotides Echvi_1191: Echvi_1191 - ABC-type multidrug transport system, ATPase and permease components, at 1,366,570 to 1,368,357 _1191 Echvi_1192: Echvi_1192 - hypothetical protein, at 1,368,487 to 1,368,804 _1192 Echvi_1193: Echvi_1193 - Zinc carboxypeptidase., at 1,368,898 to 1,370,628 _1193 Position (kb) 1368 1369Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1368.396 kb on - strandat 1368.459 kb on - strandat 1368.459 kb on - strandat 1368.459 kb on - strandat 1368.459 kb on - strandat 1368.586 kb on + strand, within Echvi_1192at 1368.586 kb on + strand, within Echvi_1192at 1368.596 kb on + strand, within Echvi_1192at 1368.613 kb on + strand, within Echvi_1192at 1368.614 kb on - strand, within Echvi_1192at 1368.621 kb on - strand, within Echvi_1192at 1368.703 kb on - strand, within Echvi_1192at 1368.703 kb on - strand, within Echvi_1192at 1368.739 kb on + strand, within Echvi_1192at 1368.768 kb on + strand, within Echvi_1192at 1368.768 kb on + strand, within Echvi_1192at 1368.768 kb on + strand, within Echvi_1192at 1368.768 kb on + strand, within Echvi_1192at 1368.768 kb on + strand, within Echvi_1192at 1368.769 kb on - strand, within Echvi_1192at 1368.769 kb on - strand, within Echvi_1192at 1368.783 kb on + strandat 1368.836 kb on + strandat 1368.837 kb on - strandat 1368.837 kb on - strandat 1368.837 kb on - strandat 1368.847 kb on + strandat 1368.869 kb on + strandat 1368.869 kb on + strandat 1368.869 kb on + strandat 1368.869 kb on + strandat 1368.869 kb on + strandat 1368.870 kb on - strandat 1368.870 kb on - strandat 1368.880 kb on + strandat 1368.881 kb on - strandat 1368.899 kb on + strandat 1368.915 kb on + strandat 1368.915 kb on + strandat 1368.929 kb on + strandat 1368.930 kb on - strandat 1368.930 kb on - strandat 1368.960 kb on - strandat 1368.960 kb on - strandat 1368.960 kb on - strandat 1368.969 kb on + strandat 1368.969 kb on + strandat 1368.969 kb on + strandat 1368.969 kb on + strandat 1368.969 kb on + strandat 1368.969 kb on + strandat 1368.969 kb on + strandat 1368.970 kb on - strandat 1368.970 kb on - strandat 1368.970 kb on - strandat 1368.970 kb on - strandat 1369.059 kb on - strandat 1369.059 kb on - strandat 1369.059 kb on - strandat 1369.085 kb on + strand, within Echvi_1193at 1369.143 kb on - strand, within Echvi_1193at 1369.203 kb on + strand, within Echvi_1193at 1369.203 kb on + strand, within Echvi_1193at 1369.204 kb on - strand, within Echvi_1193at 1369.234 kb on + strand, within Echvi_1193at 1369.255 kb on + strand, within Echvi_1193at 1369.255 kb on + strand, within Echvi_1193at 1369.255 kb on + strand, within Echvi_1193at 1369.277 kb on + strand, within Echvi_1193at 1369.277 kb on + strand, within Echvi_1193at 1369.278 kb on - strand, within Echvi_1193at 1369.289 kb on + strand, within Echvi_1193at 1369.290 kb on - strand, within Echvi_1193at 1369.322 kb on + strand, within Echvi_1193at 1369.322 kb on + strand, within Echvi_1193at 1369.322 kb on + strand, within Echvi_1193at 1369.323 kb on - strand, within Echvi_1193at 1369.325 kb on + strand, within Echvi_1193at 1369.325 kb on + strand, within Echvi_1193at 1369.400 kb on - strand, within Echvi_1193at 1369.427 kb on + strand, within Echvi_1193at 1369.427 kb on + strand, within Echvi_1193at 1369.427 kb on + strand, within Echvi_1193at 1369.427 kb on + strand, within Echvi_1193at 1369.428 kb on - strand, within Echvi_1193at 1369.428 kb on - strand, within Echvi_1193at 1369.428 kb on - strand, within Echvi_1193at 1369.428 kb on - strand, within Echvi_1193at 1369.428 kb on - strand, within Echvi_1193at 1369.430 kb on + strand, within Echvi_1193at 1369.430 kb on + strand, within Echvi_1193at 1369.430 kb on + strand, within Echvi_1193at 1369.430 kb on + strand, within Echvi_1193at 1369.430 kb on + strand, within Echvi_1193at 1369.431 kb on - strand, within Echvi_1193at 1369.431 kb on - strand, within Echvi_1193at 1369.431 kb on - strand, within Echvi_1193at 1369.431 kb on - strand, within Echvi_1193at 1369.431 kb on - strand, within Echvi_1193at 1369.431 kb on - strand, within Echvi_1193at 1369.431 kb on - strand, within Echvi_1193at 1369.431 kb on - strand, within Echvi_1193at 1369.463 kb on + strand, within Echvi_1193at 1369.463 kb on + strand, within Echvi_1193at 1369.463 kb on + strand, within Echvi_1193at 1369.463 kb on + strand, within Echvi_1193at 1369.464 kb on - strand, within Echvi_1193at 1369.464 kb on - strand, within Echvi_1193at 1369.464 kb on - strand, within Echvi_1193at 1369.464 kb on - strand, within Echvi_1193at 1369.464 kb on - strand, within Echvi_1193at 1369.472 kb on + strand, within Echvi_1193at 1369.577 kb on - strand, within Echvi_1193at 1369.608 kb on - strand, within Echvi_1193at 1369.611 kb on + strand, within Echvi_1193at 1369.611 kb on + strand, within Echvi_1193at 1369.612 kb on - strand, within Echvi_1193at 1369.612 kb on - strand, within Echvi_1193at 1369.612 kb on - strand, within Echvi_1193at 1369.612 kb on - strand, within Echvi_1193at 1369.612 kb on - strand, within Echvi_1193at 1369.721 kb on + strand, within Echvi_1193at 1369.721 kb on + strand, within Echvi_1193at 1369.721 kb on + strand, within Echvi_1193at 1369.722 kb on - strand, within Echvi_1193at 1369.722 kb on - strand, within Echvi_1193at 1369.758 kb on + strand, within Echvi_1193at 1369.759 kb on - strand, within Echvi_1193at 1369.775 kb on + strand, within Echvi_1193at 1369.776 kb on - strandat 1369.779 kb on + strand, within Echvi_1193at 1369.779 kb on + strand, within Echvi_1193at 1369.779 kb on + strand, within Echvi_1193at 1369.779 kb on + strand, within Echvi_1193at 1369.779 kb on + strand, within Echvi_1193at 1369.779 kb on + strand, within Echvi_1193at 1369.779 kb on + strand, within Echvi_1193at 1369.780 kb on - strand, within Echvi_1193at 1369.780 kb on - strand, within Echvi_1193at 1369.780 kb on - strand, within Echvi_1193at 1369.780 kb on - strand, within Echvi_1193at 1369.780 kb on - strand, within Echvi_1193at 1369.780 kb on - strand, within Echvi_1193at 1369.786 kb on - strand, within Echvi_1193at 1369.802 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,368,396 - -0.1
1,368,459 - +0.5
1,368,459 - -0.3
1,368,459 - -2.1
1,368,459 - +1.1
1,368,586 + Echvi_1192 0.31 -0.1
1,368,586 + Echvi_1192 0.31 +0.8
1,368,596 + Echvi_1192 0.34 -0.8
1,368,613 + Echvi_1192 0.40 -2.3
1,368,614 - Echvi_1192 0.40 -0.3
1,368,621 - Echvi_1192 0.42 -0.6
1,368,703 - Echvi_1192 0.68 -0.0
1,368,703 - Echvi_1192 0.68 -2.4
1,368,739 + Echvi_1192 0.79 -0.2
1,368,768 + Echvi_1192 0.88 -0.5
1,368,768 + Echvi_1192 0.88 -1.6
1,368,768 + Echvi_1192 0.88 -0.3
1,368,768 + Echvi_1192 0.88 -0.4
1,368,768 + Echvi_1192 0.88 -2.5
1,368,769 - Echvi_1192 0.89 +0.1
1,368,769 - Echvi_1192 0.89 +1.3
1,368,783 + +0.1
1,368,836 + +0.2
1,368,837 - -1.3
1,368,837 - +0.4
1,368,837 - -0.8
1,368,847 + +0.5
1,368,869 + -1.7
1,368,869 + +0.3
1,368,869 + -0.6
1,368,869 + -0.0
1,368,869 + +0.3
1,368,870 - -1.1
1,368,870 - -2.6
1,368,880 + +0.1
1,368,881 - -2.5
1,368,899 + -1.5
1,368,915 + -0.2
1,368,915 + +0.7
1,368,929 + +0.6
1,368,930 - -1.4
1,368,930 - -1.1
1,368,960 - +0.3
1,368,960 - -1.1
1,368,960 - -0.4
1,368,969 + +0.7
1,368,969 + -0.5
1,368,969 + +0.4
1,368,969 + +0.5
1,368,969 + -1.8
1,368,969 + +0.7
1,368,969 + +0.4
1,368,970 - -0.1
1,368,970 - -1.6
1,368,970 - +0.5
1,368,970 - -1.6
1,369,059 - +1.1
1,369,059 - +0.3
1,369,059 - -0.5
1,369,085 + Echvi_1193 0.11 +0.5
1,369,143 - Echvi_1193 0.14 -0.5
1,369,203 + Echvi_1193 0.18 -0.9
1,369,203 + Echvi_1193 0.18 +0.1
1,369,204 - Echvi_1193 0.18 +1.3
1,369,234 + Echvi_1193 0.19 +0.0
1,369,255 + Echvi_1193 0.21 -0.2
1,369,255 + Echvi_1193 0.21 -1.7
1,369,255 + Echvi_1193 0.21 +1.4
1,369,277 + Echvi_1193 0.22 -1.4
1,369,277 + Echvi_1193 0.22 +0.4
1,369,278 - Echvi_1193 0.22 -1.1
1,369,289 + Echvi_1193 0.23 +1.3
1,369,290 - Echvi_1193 0.23 +0.1
1,369,322 + Echvi_1193 0.24 -0.7
1,369,322 + Echvi_1193 0.24 -1.4
1,369,322 + Echvi_1193 0.24 +0.3
1,369,323 - Echvi_1193 0.25 -0.4
1,369,325 + Echvi_1193 0.25 +0.3
1,369,325 + Echvi_1193 0.25 -0.2
1,369,400 - Echvi_1193 0.29 -2.6
1,369,427 + Echvi_1193 0.31 +0.4
1,369,427 + Echvi_1193 0.31 +1.3
1,369,427 + Echvi_1193 0.31 -2.5
1,369,427 + Echvi_1193 0.31 -1.2
1,369,428 - Echvi_1193 0.31 -1.0
1,369,428 - Echvi_1193 0.31 +0.7
1,369,428 - Echvi_1193 0.31 -0.8
1,369,428 - Echvi_1193 0.31 -1.4
1,369,428 - Echvi_1193 0.31 +0.8
1,369,430 + Echvi_1193 0.31 -1.2
1,369,430 + Echvi_1193 0.31 -1.4
1,369,430 + Echvi_1193 0.31 +1.0
1,369,430 + Echvi_1193 0.31 -0.5
1,369,430 + Echvi_1193 0.31 -0.6
1,369,431 - Echvi_1193 0.31 +0.1
1,369,431 - Echvi_1193 0.31 -0.7
1,369,431 - Echvi_1193 0.31 +0.5
1,369,431 - Echvi_1193 0.31 -0.1
1,369,431 - Echvi_1193 0.31 +0.2
1,369,431 - Echvi_1193 0.31 +0.1
1,369,431 - Echvi_1193 0.31 +1.2
1,369,431 - Echvi_1193 0.31 -0.5
1,369,463 + Echvi_1193 0.33 -0.9
1,369,463 + Echvi_1193 0.33 +0.3
1,369,463 + Echvi_1193 0.33 -0.9
1,369,463 + Echvi_1193 0.33 -0.9
1,369,464 - Echvi_1193 0.33 -0.4
1,369,464 - Echvi_1193 0.33 +1.2
1,369,464 - Echvi_1193 0.33 +2.5
1,369,464 - Echvi_1193 0.33 -0.7
1,369,464 - Echvi_1193 0.33 -1.6
1,369,472 + Echvi_1193 0.33 +1.8
1,369,577 - Echvi_1193 0.39 -0.4
1,369,608 - Echvi_1193 0.41 +1.3
1,369,611 + Echvi_1193 0.41 -0.6
1,369,611 + Echvi_1193 0.41 +0.6
1,369,612 - Echvi_1193 0.41 -0.6
1,369,612 - Echvi_1193 0.41 -0.4
1,369,612 - Echvi_1193 0.41 -1.1
1,369,612 - Echvi_1193 0.41 +0.2
1,369,612 - Echvi_1193 0.41 -0.8
1,369,721 + Echvi_1193 0.48 -0.6
1,369,721 + Echvi_1193 0.48 +0.3
1,369,721 + Echvi_1193 0.48 -0.9
1,369,722 - Echvi_1193 0.48 -1.3
1,369,722 - Echvi_1193 0.48 -0.2
1,369,758 + Echvi_1193 0.50 +2.1
1,369,759 - Echvi_1193 0.50 +1.5
1,369,775 + Echvi_1193 0.51 -2.1
1,369,776 - -0.5
1,369,779 + Echvi_1193 0.51 -0.8
1,369,779 + Echvi_1193 0.51 +1.3
1,369,779 + Echvi_1193 0.51 -0.3
1,369,779 + Echvi_1193 0.51 -0.8
1,369,779 + Echvi_1193 0.51 +0.9
1,369,779 + Echvi_1193 0.51 -0.0
1,369,779 + Echvi_1193 0.51 -2.1
1,369,780 - Echvi_1193 0.51 +0.5
1,369,780 - Echvi_1193 0.51 -0.7
1,369,780 - Echvi_1193 0.51 +0.7
1,369,780 - Echvi_1193 0.51 -1.1
1,369,780 - Echvi_1193 0.51 +0.3
1,369,780 - Echvi_1193 0.51 -0.4
1,369,786 - Echvi_1193 0.51 +0.4
1,369,802 + +2.8

Or see this region's nucleotide sequence