Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1144

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_1143 and Echvi_1144 are separated by 144 nucleotidesEchvi_1144 and Echvi_1145 are separated by 390 nucleotides Echvi_1143: Echvi_1143 - Beta-galactosidase/beta-glucuronidase, at 1,308,533 to 1,311,313 _1143 Echvi_1144: Echvi_1144 - Glutamate decarboxylase and related PLP-dependent proteins, at 1,311,458 to 1,312,708 _1144 Echvi_1145: Echvi_1145 - Shikimate 5-dehydrogenase, at 1,313,099 to 1,313,839 _1145 Position (kb) 1311 1312 1313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.494 kb on + strand, within Echvi_1143at 1310.495 kb on - strand, within Echvi_1143at 1310.495 kb on - strand, within Echvi_1143at 1310.495 kb on - strand, within Echvi_1143at 1310.495 kb on - strand, within Echvi_1143at 1310.495 kb on - strand, within Echvi_1143at 1310.495 kb on - strand, within Echvi_1143at 1310.526 kb on + strand, within Echvi_1143at 1310.526 kb on + strand, within Echvi_1143at 1310.527 kb on - strand, within Echvi_1143at 1310.527 kb on - strand, within Echvi_1143at 1310.527 kb on - strand, within Echvi_1143at 1310.566 kb on - strand, within Echvi_1143at 1310.574 kb on + strand, within Echvi_1143at 1310.574 kb on + strand, within Echvi_1143at 1310.575 kb on - strand, within Echvi_1143at 1310.711 kb on + strand, within Echvi_1143at 1310.712 kb on - strand, within Echvi_1143at 1310.717 kb on - strand, within Echvi_1143at 1310.717 kb on - strand, within Echvi_1143at 1310.718 kb on + strand, within Echvi_1143at 1310.718 kb on + strand, within Echvi_1143at 1310.719 kb on - strand, within Echvi_1143at 1310.719 kb on - strand, within Echvi_1143at 1310.724 kb on + strand, within Echvi_1143at 1310.738 kb on + strand, within Echvi_1143at 1310.738 kb on + strand, within Echvi_1143at 1310.738 kb on + strand, within Echvi_1143at 1310.738 kb on + strand, within Echvi_1143at 1310.739 kb on - strand, within Echvi_1143at 1310.828 kb on + strand, within Echvi_1143at 1310.829 kb on - strand, within Echvi_1143at 1310.829 kb on - strand, within Echvi_1143at 1310.954 kb on + strand, within Echvi_1143at 1310.954 kb on + strand, within Echvi_1143at 1310.954 kb on + strand, within Echvi_1143at 1310.954 kb on + strand, within Echvi_1143at 1310.955 kb on - strand, within Echvi_1143at 1310.956 kb on + strand, within Echvi_1143at 1310.957 kb on - strand, within Echvi_1143at 1310.957 kb on - strand, within Echvi_1143at 1310.962 kb on + strand, within Echvi_1143at 1310.962 kb on + strand, within Echvi_1143at 1310.962 kb on + strand, within Echvi_1143at 1310.963 kb on - strand, within Echvi_1143at 1310.963 kb on - strand, within Echvi_1143at 1310.975 kb on + strand, within Echvi_1143at 1311.030 kb on + strand, within Echvi_1143at 1311.030 kb on + strand, within Echvi_1143at 1311.031 kb on - strand, within Echvi_1143at 1311.077 kb on - strandat 1311.110 kb on - strandat 1311.128 kb on + strandat 1311.129 kb on - strandat 1311.129 kb on - strandat 1311.184 kb on + strandat 1311.307 kb on + strandat 1311.341 kb on + strandat 1311.342 kb on - strandat 1311.375 kb on + strandat 1311.391 kb on - strandat 1311.426 kb on + strandat 1311.460 kb on - strandat 1311.460 kb on - strandat 1311.485 kb on + strandat 1311.521 kb on + strandat 1311.522 kb on - strandat 1311.611 kb on + strand, within Echvi_1144at 1311.730 kb on - strand, within Echvi_1144at 1311.759 kb on - strand, within Echvi_1144at 1311.807 kb on - strand, within Echvi_1144at 1311.813 kb on + strand, within Echvi_1144at 1311.813 kb on + strand, within Echvi_1144at 1311.813 kb on + strand, within Echvi_1144at 1311.814 kb on - strand, within Echvi_1144at 1311.831 kb on + strand, within Echvi_1144at 1311.831 kb on + strand, within Echvi_1144at 1311.831 kb on + strand, within Echvi_1144at 1311.831 kb on + strand, within Echvi_1144at 1311.831 kb on + strand, within Echvi_1144at 1311.832 kb on - strand, within Echvi_1144at 1311.832 kb on - strand, within Echvi_1144at 1311.832 kb on - strand, within Echvi_1144at 1311.862 kb on + strand, within Echvi_1144at 1311.864 kb on + strand, within Echvi_1144at 1311.864 kb on + strand, within Echvi_1144at 1311.865 kb on - strand, within Echvi_1144at 1311.865 kb on - strand, within Echvi_1144at 1311.865 kb on - strand, within Echvi_1144at 1311.897 kb on + strand, within Echvi_1144at 1311.916 kb on + strand, within Echvi_1144at 1311.917 kb on - strand, within Echvi_1144at 1311.917 kb on - strand, within Echvi_1144at 1311.944 kb on - strand, within Echvi_1144at 1311.961 kb on + strand, within Echvi_1144at 1311.962 kb on - strand, within Echvi_1144at 1311.962 kb on - strand, within Echvi_1144at 1311.963 kb on + strand, within Echvi_1144at 1311.963 kb on + strand, within Echvi_1144at 1311.963 kb on + strand, within Echvi_1144at 1311.963 kb on + strand, within Echvi_1144at 1311.964 kb on - strand, within Echvi_1144at 1311.964 kb on - strand, within Echvi_1144at 1311.964 kb on - strand, within Echvi_1144at 1311.982 kb on + strand, within Echvi_1144at 1311.990 kb on + strand, within Echvi_1144at 1312.005 kb on + strand, within Echvi_1144at 1312.097 kb on - strand, within Echvi_1144at 1312.097 kb on - strand, within Echvi_1144at 1312.129 kb on + strand, within Echvi_1144at 1312.257 kb on + strand, within Echvi_1144at 1312.275 kb on + strand, within Echvi_1144at 1312.275 kb on + strand, within Echvi_1144at 1312.276 kb on - strand, within Echvi_1144at 1312.276 kb on - strand, within Echvi_1144at 1312.380 kb on + strand, within Echvi_1144at 1312.380 kb on + strand, within Echvi_1144at 1312.380 kb on + strand, within Echvi_1144at 1312.381 kb on - strand, within Echvi_1144at 1312.381 kb on - strand, within Echvi_1144at 1312.381 kb on - strand, within Echvi_1144at 1312.413 kb on - strand, within Echvi_1144at 1312.540 kb on + strand, within Echvi_1144at 1312.541 kb on - strand, within Echvi_1144at 1312.576 kb on - strand, within Echvi_1144at 1312.576 kb on - strand, within Echvi_1144at 1312.596 kb on + strandat 1312.596 kb on + strandat 1312.597 kb on - strandat 1312.623 kb on + strandat 1312.635 kb on + strandat 1312.635 kb on + strandat 1312.635 kb on + strandat 1312.636 kb on - strandat 1312.636 kb on - strandat 1312.636 kb on - strandat 1312.636 kb on - strandat 1312.640 kb on - strandat 1312.664 kb on + strandat 1312.675 kb on + strandat 1312.778 kb on + strandat 1312.781 kb on - strandat 1312.827 kb on + strandat 1312.855 kb on + strandat 1312.856 kb on - strandat 1312.883 kb on + strandat 1312.883 kb on + strandat 1312.884 kb on - strandat 1312.884 kb on - strandat 1312.884 kb on - strandat 1312.884 kb on - strandat 1312.884 kb on - strandat 1312.909 kb on - strandat 1312.909 kb on - strandat 1312.922 kb on + strandat 1313.008 kb on + strandat 1313.100 kb on + strandat 1313.101 kb on - strandat 1313.101 kb on - strandat 1313.101 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,310,494 + Echvi_1143 0.71 -0.8
1,310,494 + Echvi_1143 0.71 +0.2
1,310,494 + Echvi_1143 0.71 +2.6
1,310,494 + Echvi_1143 0.71 +0.2
1,310,494 + Echvi_1143 0.71 +1.1
1,310,494 + Echvi_1143 0.71 +0.5
1,310,494 + Echvi_1143 0.71 -0.4
1,310,494 + Echvi_1143 0.71 -0.3
1,310,494 + Echvi_1143 0.71 -1.1
1,310,494 + Echvi_1143 0.71 -0.9
1,310,495 - Echvi_1143 0.71 +1.9
1,310,495 - Echvi_1143 0.71 +0.0
1,310,495 - Echvi_1143 0.71 -1.2
1,310,495 - Echvi_1143 0.71 -0.9
1,310,495 - Echvi_1143 0.71 -0.4
1,310,495 - Echvi_1143 0.71 -1.1
1,310,526 + Echvi_1143 0.72 -0.1
1,310,526 + Echvi_1143 0.72 +0.5
1,310,527 - Echvi_1143 0.72 -0.6
1,310,527 - Echvi_1143 0.72 -0.3
1,310,527 - Echvi_1143 0.72 -1.2
1,310,566 - Echvi_1143 0.73 +0.4
1,310,574 + Echvi_1143 0.73 -2.4
1,310,574 + Echvi_1143 0.73 +0.5
1,310,575 - Echvi_1143 0.73 -1.2
1,310,711 + Echvi_1143 0.78 -0.6
1,310,712 - Echvi_1143 0.78 +0.1
1,310,717 - Echvi_1143 0.79 -0.4
1,310,717 - Echvi_1143 0.79 +0.0
1,310,718 + Echvi_1143 0.79 +0.2
1,310,718 + Echvi_1143 0.79 -0.6
1,310,719 - Echvi_1143 0.79 +0.1
1,310,719 - Echvi_1143 0.79 +0.9
1,310,724 + Echvi_1143 0.79 -0.9
1,310,738 + Echvi_1143 0.79 +0.6
1,310,738 + Echvi_1143 0.79 -0.9
1,310,738 + Echvi_1143 0.79 +0.9
1,310,738 + Echvi_1143 0.79 +1.2
1,310,739 - Echvi_1143 0.79 +0.2
1,310,828 + Echvi_1143 0.83 -1.4
1,310,829 - Echvi_1143 0.83 -0.8
1,310,829 - Echvi_1143 0.83 +0.6
1,310,954 + Echvi_1143 0.87 -1.8
1,310,954 + Echvi_1143 0.87 +0.4
1,310,954 + Echvi_1143 0.87 -0.4
1,310,954 + Echvi_1143 0.87 +0.9
1,310,955 - Echvi_1143 0.87 +0.0
1,310,956 + Echvi_1143 0.87 -0.6
1,310,957 - Echvi_1143 0.87 -1.8
1,310,957 - Echvi_1143 0.87 -0.4
1,310,962 + Echvi_1143 0.87 +1.0
1,310,962 + Echvi_1143 0.87 +0.9
1,310,962 + Echvi_1143 0.87 -0.1
1,310,963 - Echvi_1143 0.87 -0.2
1,310,963 - Echvi_1143 0.87 +1.2
1,310,975 + Echvi_1143 0.88 -2.2
1,311,030 + Echvi_1143 0.90 -1.6
1,311,030 + Echvi_1143 0.90 +0.8
1,311,031 - Echvi_1143 0.90 +1.4
1,311,077 - -0.2
1,311,110 - -1.9
1,311,128 + +0.6
1,311,129 - +0.7
1,311,129 - +0.6
1,311,184 + -1.0
1,311,307 + +0.1
1,311,341 + -1.3
1,311,342 - +0.7
1,311,375 + +0.4
1,311,391 - -0.1
1,311,426 + +0.5
1,311,460 - -1.3
1,311,460 - -0.3
1,311,485 + +0.5
1,311,521 + -0.0
1,311,522 - +0.5
1,311,611 + Echvi_1144 0.12 +0.7
1,311,730 - Echvi_1144 0.22 +0.1
1,311,759 - Echvi_1144 0.24 -0.7
1,311,807 - Echvi_1144 0.28 -0.3
1,311,813 + Echvi_1144 0.28 +1.0
1,311,813 + Echvi_1144 0.28 -0.5
1,311,813 + Echvi_1144 0.28 -0.2
1,311,814 - Echvi_1144 0.28 -0.2
1,311,831 + Echvi_1144 0.30 -0.1
1,311,831 + Echvi_1144 0.30 -0.8
1,311,831 + Echvi_1144 0.30 -0.3
1,311,831 + Echvi_1144 0.30 -0.3
1,311,831 + Echvi_1144 0.30 -1.9
1,311,832 - Echvi_1144 0.30 +0.7
1,311,832 - Echvi_1144 0.30 +1.1
1,311,832 - Echvi_1144 0.30 -1.2
1,311,862 + Echvi_1144 0.32 -0.1
1,311,864 + Echvi_1144 0.32 +0.4
1,311,864 + Echvi_1144 0.32 +1.9
1,311,865 - Echvi_1144 0.33 -0.3
1,311,865 - Echvi_1144 0.33 +0.6
1,311,865 - Echvi_1144 0.33 -0.5
1,311,897 + Echvi_1144 0.35 +1.1
1,311,916 + Echvi_1144 0.37 -1.5
1,311,917 - Echvi_1144 0.37 -1.5
1,311,917 - Echvi_1144 0.37 -0.3
1,311,944 - Echvi_1144 0.39 +0.3
1,311,961 + Echvi_1144 0.40 +0.6
1,311,962 - Echvi_1144 0.40 -1.6
1,311,962 - Echvi_1144 0.40 +0.3
1,311,963 + Echvi_1144 0.40 +0.2
1,311,963 + Echvi_1144 0.40 -0.2
1,311,963 + Echvi_1144 0.40 -1.1
1,311,963 + Echvi_1144 0.40 -1.6
1,311,964 - Echvi_1144 0.40 -0.4
1,311,964 - Echvi_1144 0.40 +0.3
1,311,964 - Echvi_1144 0.40 -2.2
1,311,982 + Echvi_1144 0.42 +0.9
1,311,990 + Echvi_1144 0.43 +0.8
1,312,005 + Echvi_1144 0.44 -0.2
1,312,097 - Echvi_1144 0.51 -0.2
1,312,097 - Echvi_1144 0.51 +1.3
1,312,129 + Echvi_1144 0.54 -0.1
1,312,257 + Echvi_1144 0.64 +0.3
1,312,275 + Echvi_1144 0.65 -0.4
1,312,275 + Echvi_1144 0.65 -0.8
1,312,276 - Echvi_1144 0.65 -1.6
1,312,276 - Echvi_1144 0.65 +0.1
1,312,380 + Echvi_1144 0.74 +3.1
1,312,380 + Echvi_1144 0.74 +0.8
1,312,380 + Echvi_1144 0.74 -0.5
1,312,381 - Echvi_1144 0.74 +0.6
1,312,381 - Echvi_1144 0.74 -0.5
1,312,381 - Echvi_1144 0.74 -0.3
1,312,413 - Echvi_1144 0.76 -1.1
1,312,540 + Echvi_1144 0.86 -1.5
1,312,541 - Echvi_1144 0.87 -1.5
1,312,576 - Echvi_1144 0.89 -0.3
1,312,576 - Echvi_1144 0.89 +1.5
1,312,596 + +0.1
1,312,596 + -0.5
1,312,597 - +1.8
1,312,623 + -0.5
1,312,635 + -0.4
1,312,635 + +1.3
1,312,635 + -0.1
1,312,636 - +0.1
1,312,636 - -0.0
1,312,636 - -0.1
1,312,636 - +1.2
1,312,640 - -1.4
1,312,664 + -0.6
1,312,675 + -0.3
1,312,778 + -1.8
1,312,781 - -2.4
1,312,827 + -0.8
1,312,855 + -2.7
1,312,856 - -1.8
1,312,883 + +1.4
1,312,883 + -1.5
1,312,884 - -2.7
1,312,884 - -0.1
1,312,884 - +0.2
1,312,884 - -1.2
1,312,884 - +0.5
1,312,909 - -1.8
1,312,909 - +0.1
1,312,922 + -1.3
1,313,008 + +0.2
1,313,100 + -1.2
1,313,101 - -3.1
1,313,101 - +1.1
1,313,101 - +0.1

Or see this region's nucleotide sequence