Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0573

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0572 and Echvi_0573 are separated by 199 nucleotidesEchvi_0573 and Echvi_0574 are separated by 92 nucleotidesEchvi_0574 and Echvi_0575 are separated by 52 nucleotidesEchvi_0575 and Echvi_0576 are separated by 31 nucleotides Echvi_0572: Echvi_0572 - hypothetical protein, at 650,250 to 651,383 _0572 Echvi_0573: Echvi_0573 - signal recognition particle-docking protein FtsY, at 651,583 to 652,548 _0573 Echvi_0574: Echvi_0574 - hypothetical protein, at 652,641 to 652,793 _0574 Echvi_0575: Echvi_0575 - ribosomal protein L33, bacterial type, at 652,846 to 653,028 _0575 Echvi_0576: Echvi_0576 - ribosomal protein L28, at 653,060 to 653,302 _0576 Position (kb) 651 652 653Strain fitness (log2 ratio) -1 0 1at 650.586 kb on - strand, within Echvi_0572at 650.671 kb on - strand, within Echvi_0572at 650.671 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.728 kb on + strand, within Echvi_0572at 650.730 kb on + strand, within Echvi_0572at 650.753 kb on + strand, within Echvi_0572at 650.755 kb on + strand, within Echvi_0572at 650.773 kb on + strand, within Echvi_0572at 650.786 kb on + strand, within Echvi_0572at 650.791 kb on + strand, within Echvi_0572at 650.792 kb on - strand, within Echvi_0572at 650.795 kb on + strand, within Echvi_0572at 650.795 kb on + strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.863 kb on + strand, within Echvi_0572at 650.864 kb on - strand, within Echvi_0572at 650.882 kb on + strand, within Echvi_0572at 650.883 kb on - strand, within Echvi_0572at 650.958 kb on - strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.996 kb on + strand, within Echvi_0572at 651.036 kb on - strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.039 kb on - strand, within Echvi_0572at 651.058 kb on + strand, within Echvi_0572at 651.177 kb on - strand, within Echvi_0572at 651.302 kb on + strandat 651.355 kb on - strandat 651.357 kb on - strandat 651.379 kb on - strandat 651.391 kb on - strandat 651.393 kb on + strandat 651.455 kb on + strandat 651.455 kb on + strandat 651.474 kb on + strandat 651.483 kb on + strandat 651.484 kb on - strandat 651.484 kb on - strandat 651.489 kb on + strandat 651.489 kb on + strandat 651.496 kb on - strandat 651.585 kb on - strandat 652.568 kb on - strandat 652.568 kb on - strandat 653.406 kb on - strandat 653.474 kb on + strandat 653.474 kb on + strandat 653.475 kb on - strandat 653.475 kb on - strandat 653.475 kb on - strandat 653.475 kb on - strandat 653.520 kb on - strandat 653.522 kb on - strandat 653.526 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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650,586 - Echvi_0572 0.30 +0.5
650,671 - Echvi_0572 0.37 -0.4
650,671 - Echvi_0572 0.37 -1.2
650,727 - Echvi_0572 0.42 +0.5
650,727 - Echvi_0572 0.42 -1.7
650,727 - Echvi_0572 0.42 +0.6
650,728 + Echvi_0572 0.42 +0.7
650,730 + Echvi_0572 0.42 +1.1
650,753 + Echvi_0572 0.44 -0.8
650,755 + Echvi_0572 0.45 -0.9
650,773 + Echvi_0572 0.46 +0.4
650,786 + Echvi_0572 0.47 +0.7
650,791 + Echvi_0572 0.48 +0.5
650,792 - Echvi_0572 0.48 -0.3
650,795 + Echvi_0572 0.48 +0.5
650,795 + Echvi_0572 0.48 -1.0
650,861 - Echvi_0572 0.54 +0.2
650,861 - Echvi_0572 0.54 +0.4
650,861 - Echvi_0572 0.54 -0.8
650,863 + Echvi_0572 0.54 -0.4
650,864 - Echvi_0572 0.54 -1.1
650,882 + Echvi_0572 0.56 +0.2
650,883 - Echvi_0572 0.56 +0.5
650,958 - Echvi_0572 0.62 -0.2
650,994 + Echvi_0572 0.66 +0.9
650,994 + Echvi_0572 0.66 -1.4
650,994 + Echvi_0572 0.66 +0.5
650,994 + Echvi_0572 0.66 -0.0
650,994 + Echvi_0572 0.66 -0.5
650,994 + Echvi_0572 0.66 -0.2
650,995 - Echvi_0572 0.66 -1.2
650,995 - Echvi_0572 0.66 -0.2
650,995 - Echvi_0572 0.66 +1.0
650,995 - Echvi_0572 0.66 +0.3
650,996 + Echvi_0572 0.66 +0.7
651,036 - Echvi_0572 0.69 -1.2
651,038 + Echvi_0572 0.69 -0.6
651,038 + Echvi_0572 0.69 -0.1
651,038 + Echvi_0572 0.69 -0.5
651,039 - Echvi_0572 0.70 -0.8
651,058 + Echvi_0572 0.71 -0.8
651,177 - Echvi_0572 0.82 -0.3
651,302 + -1.2
651,355 - +1.2
651,357 - +0.1
651,379 - -0.3
651,391 - +0.3
651,393 + +0.1
651,455 + -0.8
651,455 + -0.7
651,474 + +0.5
651,483 + -1.3
651,484 - -1.0
651,484 - -0.3
651,489 + +0.5
651,489 + -0.4
651,496 - +1.4
651,585 - -0.8
652,568 - +0.5
652,568 - -0.9
653,406 - +1.1
653,474 + +0.3
653,474 + +0.1
653,475 - +0.2
653,475 - -0.0
653,475 - +0.4
653,475 - -0.2
653,520 - -1.3
653,522 - +1.1
653,526 + +0.6

Or see this region's nucleotide sequence