Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0333

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0332 and Echvi_0333 are separated by 12 nucleotidesEchvi_0333 and Echvi_0334 are separated by 81 nucleotides Echvi_0332: Echvi_0332 - Zn-dependent protease with chaperone function, at 349,344 to 350,576 _0332 Echvi_0333: Echvi_0333 - Bacteroidetes-specific putative membrane protein, at 350,589 to 351,638 _0333 Echvi_0334: Echvi_0334 - hypothetical protein, at 351,720 to 357,350 _0334 Position (kb) 350 351 352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 349.722 kb on - strand, within Echvi_0332at 349.733 kb on + strand, within Echvi_0332at 349.733 kb on + strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.736 kb on - strand, within Echvi_0332at 349.736 kb on - strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.800 kb on - strand, within Echvi_0332at 349.805 kb on - strand, within Echvi_0332at 349.805 kb on - strand, within Echvi_0332at 349.921 kb on + strand, within Echvi_0332at 349.971 kb on - strand, within Echvi_0332at 350.021 kb on + strand, within Echvi_0332at 350.131 kb on + strand, within Echvi_0332at 350.207 kb on + strand, within Echvi_0332at 350.207 kb on + strand, within Echvi_0332at 350.207 kb on + strand, within Echvi_0332at 350.208 kb on - strand, within Echvi_0332at 350.208 kb on - strand, within Echvi_0332at 350.208 kb on - strand, within Echvi_0332at 350.208 kb on - strand, within Echvi_0332at 350.413 kb on + strand, within Echvi_0332at 350.414 kb on - strand, within Echvi_0332at 350.513 kb on + strandat 350.555 kb on - strandat 350.587 kb on + strandat 350.615 kb on + strandat 350.615 kb on + strandat 350.616 kb on - strandat 350.716 kb on + strand, within Echvi_0333at 350.716 kb on + strand, within Echvi_0333at 350.717 kb on - strand, within Echvi_0333at 350.812 kb on + strand, within Echvi_0333at 350.812 kb on + strand, within Echvi_0333at 350.813 kb on - strand, within Echvi_0333at 350.857 kb on + strand, within Echvi_0333at 350.857 kb on + strand, within Echvi_0333at 350.858 kb on - strand, within Echvi_0333at 350.863 kb on + strand, within Echvi_0333at 350.863 kb on + strand, within Echvi_0333at 350.863 kb on + strand, within Echvi_0333at 350.863 kb on + strand, within Echvi_0333at 350.864 kb on - strand, within Echvi_0333at 350.864 kb on - strand, within Echvi_0333at 350.903 kb on + strand, within Echvi_0333at 350.903 kb on + strand, within Echvi_0333at 350.905 kb on + strand, within Echvi_0333at 350.905 kb on + strand, within Echvi_0333at 350.939 kb on - strand, within Echvi_0333at 350.942 kb on + strand, within Echvi_0333at 350.942 kb on + strand, within Echvi_0333at 350.942 kb on + strand, within Echvi_0333at 350.942 kb on + strand, within Echvi_0333at 350.943 kb on - strand, within Echvi_0333at 350.943 kb on - strand, within Echvi_0333at 350.977 kb on - strand, within Echvi_0333at 351.061 kb on - strand, within Echvi_0333at 351.062 kb on + strand, within Echvi_0333at 351.165 kb on - strand, within Echvi_0333at 351.165 kb on - strand, within Echvi_0333at 351.165 kb on - strand, within Echvi_0333at 351.236 kb on - strand, within Echvi_0333at 351.236 kb on - strand, within Echvi_0333at 351.256 kb on + strand, within Echvi_0333at 351.257 kb on - strand, within Echvi_0333at 351.257 kb on - strand, within Echvi_0333at 351.257 kb on - strand, within Echvi_0333at 351.261 kb on - strand, within Echvi_0333at 351.261 kb on - strand, within Echvi_0333at 351.261 kb on - strand, within Echvi_0333at 351.261 kb on - strand, within Echvi_0333at 351.310 kb on + strand, within Echvi_0333at 351.310 kb on + strand, within Echvi_0333at 351.310 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strandat 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.360 kb on + strand, within Echvi_0333at 351.360 kb on + strand, within Echvi_0333at 351.361 kb on - strand, within Echvi_0333at 351.361 kb on - strand, within Echvi_0333at 351.395 kb on + strand, within Echvi_0333at 351.396 kb on - strand, within Echvi_0333at 351.398 kb on - strand, within Echvi_0333at 351.414 kb on - strand, within Echvi_0333at 351.435 kb on - strand, within Echvi_0333at 351.435 kb on - strand, within Echvi_0333at 351.439 kb on + strand, within Echvi_0333at 351.440 kb on - strand, within Echvi_0333at 351.440 kb on - strand, within Echvi_0333at 351.468 kb on - strand, within Echvi_0333at 351.484 kb on - strand, within Echvi_0333at 351.495 kb on + strand, within Echvi_0333at 351.496 kb on - strand, within Echvi_0333at 351.544 kb on + strandat 351.544 kb on + strandat 351.545 kb on - strandat 351.545 kb on - strandat 351.545 kb on - strandat 351.553 kb on + strandat 351.553 kb on + strandat 351.576 kb on - strandat 351.576 kb on - strandat 351.600 kb on + strandat 351.600 kb on + strandat 351.600 kb on + strandat 351.601 kb on - strandat 351.601 kb on - strandat 351.601 kb on - strandat 351.601 kb on - strandat 351.619 kb on + strandat 351.619 kb on + strandat 351.619 kb on + strandat 351.619 kb on + strandat 351.620 kb on - strandat 351.620 kb on - strandat 351.621 kb on + strandat 351.621 kb on + strandat 351.621 kb on + strandat 351.621 kb on + strandat 351.621 kb on + strandat 351.621 kb on + strandat 351.621 kb on + strandat 351.621 kb on + strandat 351.621 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.622 kb on - strandat 351.623 kb on + strandat 351.623 kb on + strandat 351.623 kb on + strandat 351.623 kb on + strandat 351.623 kb on + strandat 351.623 kb on + strandat 351.623 kb on + strandat 351.624 kb on - strandat 351.624 kb on - strandat 351.624 kb on - strandat 351.624 kb on - strandat 351.624 kb on - strandat 351.624 kb on - strandat 351.624 kb on - strandat 351.625 kb on + strandat 351.626 kb on - strandat 351.672 kb on + strandat 351.703 kb on - strandat 351.714 kb on + strandat 351.715 kb on - strandat 351.717 kb on + strandat 351.718 kb on - strandat 351.742 kb on + strandat 351.742 kb on + strandat 351.820 kb on - strandat 351.828 kb on - strandat 351.870 kb on - strandat 351.873 kb on + strandat 352.007 kb on - strandat 352.023 kb on - strandat 352.023 kb on - strandat 352.033 kb on + strandat 352.033 kb on + strandat 352.034 kb on - strandat 352.034 kb on - strandat 352.067 kb on + strandat 352.067 kb on + strandat 352.129 kb on - strandat 352.131 kb on + strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.167 kb on + strandat 352.174 kb on + strandat 352.175 kb on - strandat 352.175 kb on - strandat 352.175 kb on - strandat 352.306 kb on - strand, within Echvi_0334at 352.317 kb on + strand, within Echvi_0334at 352.356 kb on - strand, within Echvi_0334at 352.400 kb on + strand, within Echvi_0334at 352.593 kb on + strand, within Echvi_0334at 352.600 kb on - strand, within Echvi_0334at 352.602 kb on + strand, within Echvi_0334at 352.602 kb on + strand, within Echvi_0334at 352.607 kb on + strand, within Echvi_0334at 352.607 kb on + strand, within Echvi_0334at 352.607 kb on + strand, within Echvi_0334at 352.608 kb on - strand, within Echvi_0334

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
349,722 - Echvi_0332 0.31 +0.7
349,733 + Echvi_0332 0.32 +0.7
349,733 + Echvi_0332 0.32 +1.1
349,734 - Echvi_0332 0.32 +0.3
349,734 - Echvi_0332 0.32 +0.8
349,734 - Echvi_0332 0.32 -0.2
349,734 - Echvi_0332 0.32 +2.5
349,734 - Echvi_0332 0.32 +0.5
349,736 - Echvi_0332 0.32 -0.6
349,736 - Echvi_0332 0.32 +0.6
349,781 + Echvi_0332 0.35 -0.1
349,781 + Echvi_0332 0.35 +0.3
349,781 + Echvi_0332 0.35 +0.2
349,782 - Echvi_0332 0.36 -2.2
349,782 - Echvi_0332 0.36 -0.8
349,782 - Echvi_0332 0.36 -0.7
349,782 - Echvi_0332 0.36 +0.6
349,782 - Echvi_0332 0.36 -1.6
349,800 - Echvi_0332 0.37 -1.0
349,805 - Echvi_0332 0.37 +0.1
349,805 - Echvi_0332 0.37 +0.4
349,921 + Echvi_0332 0.47 -0.1
349,971 - Echvi_0332 0.51 +0.1
350,021 + Echvi_0332 0.55 +0.3
350,131 + Echvi_0332 0.64 -1.8
350,207 + Echvi_0332 0.70 -0.5
350,207 + Echvi_0332 0.70 +0.7
350,207 + Echvi_0332 0.70 -0.5
350,208 - Echvi_0332 0.70 +0.5
350,208 - Echvi_0332 0.70 +1.3
350,208 - Echvi_0332 0.70 -0.6
350,208 - Echvi_0332 0.70 -0.2
350,413 + Echvi_0332 0.87 +0.5
350,414 - Echvi_0332 0.87 -0.2
350,513 + -1.3
350,555 - -0.1
350,587 + -0.6
350,615 + -0.5
350,615 + -1.1
350,616 - -1.3
350,716 + Echvi_0333 0.12 -1.9
350,716 + Echvi_0333 0.12 -0.9
350,717 - Echvi_0333 0.12 -0.8
350,812 + Echvi_0333 0.21 -0.3
350,812 + Echvi_0333 0.21 -1.9
350,813 - Echvi_0333 0.21 -0.6
350,857 + Echvi_0333 0.26 -1.5
350,857 + Echvi_0333 0.26 -2.6
350,858 - Echvi_0333 0.26 -0.0
350,863 + Echvi_0333 0.26 -1.9
350,863 + Echvi_0333 0.26 -0.9
350,863 + Echvi_0333 0.26 -3.3
350,863 + Echvi_0333 0.26 -2.5
350,864 - Echvi_0333 0.26 -1.0
350,864 - Echvi_0333 0.26 +0.4
350,903 + Echvi_0333 0.30 -1.7
350,903 + Echvi_0333 0.30 -2.6
350,905 + Echvi_0333 0.30 -1.1
350,905 + Echvi_0333 0.30 -1.5
350,939 - Echvi_0333 0.33 -0.8
350,942 + Echvi_0333 0.34 -1.8
350,942 + Echvi_0333 0.34 -1.3
350,942 + Echvi_0333 0.34 -0.8
350,942 + Echvi_0333 0.34 +0.2
350,943 - Echvi_0333 0.34 +0.1
350,943 - Echvi_0333 0.34 -1.9
350,977 - Echvi_0333 0.37 -1.7
351,061 - Echvi_0333 0.45 -0.7
351,062 + Echvi_0333 0.45 -0.6
351,165 - Echvi_0333 0.55 -1.8
351,165 - Echvi_0333 0.55 -2.0
351,165 - Echvi_0333 0.55 +0.3
351,236 - Echvi_0333 0.62 -1.6
351,236 - Echvi_0333 0.62 -0.7
351,256 + Echvi_0333 0.64 +2.1
351,257 - Echvi_0333 0.64 -0.4
351,257 - Echvi_0333 0.64 -1.0
351,257 - Echvi_0333 0.64 -1.5
351,261 - Echvi_0333 0.64 -2.4
351,261 - Echvi_0333 0.64 +1.0
351,261 - Echvi_0333 0.64 -1.8
351,261 - Echvi_0333 0.64 +1.7
351,310 + Echvi_0333 0.69 -1.7
351,310 + Echvi_0333 0.69 -1.3
351,310 + Echvi_0333 0.69 +1.1
351,316 + Echvi_0333 0.69 -0.9
351,316 + Echvi_0333 0.69 -0.4
351,316 + Echvi_0333 0.69 -0.8
351,316 + Echvi_0333 0.69 -0.3
351,316 + Echvi_0333 0.69 -2.5
351,316 + Echvi_0333 0.69 +0.2
351,316 + Echvi_0333 0.69 -1.3
351,316 + Echvi_0333 0.69 -2.3
351,316 + +2.1
351,316 + Echvi_0333 0.69 -1.4
351,316 + Echvi_0333 0.69 -1.3
351,316 + Echvi_0333 0.69 +0.1
351,316 + Echvi_0333 0.69 +0.4
351,316 + Echvi_0333 0.69 +0.2
351,316 + Echvi_0333 0.69 -1.3
351,316 + Echvi_0333 0.69 -2.7
351,317 - Echvi_0333 0.69 -2.0
351,317 - Echvi_0333 0.69 -2.7
351,317 - Echvi_0333 0.69 -1.2
351,317 - Echvi_0333 0.69 -1.6
351,317 - Echvi_0333 0.69 -3.7
351,317 - Echvi_0333 0.69 -3.0
351,317 - Echvi_0333 0.69 -0.6
351,317 - Echvi_0333 0.69 -3.3
351,317 - Echvi_0333 0.69 +0.7
351,317 - Echvi_0333 0.69 -1.4
351,317 - Echvi_0333 0.69 -1.5
351,317 - Echvi_0333 0.69 -2.6
351,317 - Echvi_0333 0.69 -1.6
351,360 + Echvi_0333 0.73 -0.7
351,360 + Echvi_0333 0.73 -1.1
351,361 - Echvi_0333 0.74 -0.6
351,361 - Echvi_0333 0.74 -2.1
351,395 + Echvi_0333 0.77 -0.8
351,396 - Echvi_0333 0.77 -1.7
351,398 - Echvi_0333 0.77 -0.6
351,414 - Echvi_0333 0.79 +0.5
351,435 - Echvi_0333 0.81 -1.6
351,435 - Echvi_0333 0.81 -0.8
351,439 + Echvi_0333 0.81 -3.9
351,440 - Echvi_0333 0.81 -1.6
351,440 - Echvi_0333 0.81 -1.2
351,468 - Echvi_0333 0.84 -1.0
351,484 - Echvi_0333 0.85 -0.7
351,495 + Echvi_0333 0.86 -2.1
351,496 - Echvi_0333 0.86 -1.8
351,544 + -1.2
351,544 + -2.1
351,545 - -2.0
351,545 - -1.4
351,545 - -1.3
351,553 + +0.5
351,553 + -1.2
351,576 - -0.2
351,576 - -2.1
351,600 + -0.3
351,600 + -1.9
351,600 + -1.4
351,601 - -0.5
351,601 - -1.1
351,601 - -2.7
351,601 - -1.3
351,619 + -1.4
351,619 + -0.5
351,619 + -0.5
351,619 + -1.9
351,620 - -1.3
351,620 - -1.2
351,621 + -1.7
351,621 + +0.1
351,621 + +0.9
351,621 + -1.4
351,621 + -0.1
351,621 + -1.0
351,621 + -0.6
351,621 + -0.1
351,621 - -1.0
351,622 - +0.0
351,622 - -1.1
351,622 - +0.4
351,622 - -0.1
351,622 - -0.8
351,622 - -0.9
351,622 - -1.2
351,622 - -0.5
351,622 - -2.4
351,622 - -1.7
351,622 - -1.4
351,622 - -0.1
351,622 - -0.6
351,622 - -0.0
351,622 - -2.6
351,622 - -1.1
351,622 - -0.8
351,622 - -0.6
351,623 + -0.7
351,623 + -0.8
351,623 + -1.5
351,623 + -0.1
351,623 + +1.1
351,623 + -1.6
351,623 + +1.4
351,624 - +0.1
351,624 - -0.5
351,624 - +0.6
351,624 - -1.4
351,624 - -0.6
351,624 - -1.2
351,624 - -2.5
351,625 + -1.7
351,626 - -2.0
351,672 + -0.3
351,703 - +0.5
351,714 + -0.5
351,715 - -1.1
351,717 + +1.1
351,718 - -1.2
351,742 + -2.3
351,742 + -1.3
351,820 - -0.9
351,828 - -1.1
351,870 - -1.5
351,873 + -1.7
352,007 - -0.3
352,023 - -1.0
352,023 - -0.9
352,033 + -2.2
352,033 + -2.6
352,034 - -1.2
352,034 - -2.0
352,067 + -0.7
352,067 + -2.1
352,129 - -0.7
352,131 + -1.8
352,134 - -1.6
352,134 - -1.5
352,167 + -2.6
352,174 + -0.9
352,175 - -1.9
352,175 - -1.0
352,175 - -1.4
352,306 - Echvi_0334 0.10 +1.5
352,317 + Echvi_0334 0.11 -0.6
352,356 - Echvi_0334 0.11 -2.1
352,400 + Echvi_0334 0.12 -0.1
352,593 + Echvi_0334 0.16 -2.3
352,600 - Echvi_0334 0.16 -0.6
352,602 + Echvi_0334 0.16 -0.2
352,602 + Echvi_0334 0.16 -1.4
352,607 + Echvi_0334 0.16 -0.3
352,607 + Echvi_0334 0.16 -2.2
352,607 + Echvi_0334 0.16 +0.5
352,608 - Echvi_0334 0.16 -1.6

Or see this region's nucleotide sequence