Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13190

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13180 and CA264_13185 are separated by 14 nucleotidesCA264_13185 and CA264_13190 are separated by 140 nucleotidesCA264_13190 and CA264_13195 are separated by 413 nucleotides CA264_13180: CA264_13180 - gamma-glutamyltransferase, at 3,070,962 to 3,072,695 _13180 CA264_13185: CA264_13185 - hypothetical protein, at 3,072,710 to 3,073,102 _13185 CA264_13190: CA264_13190 - hypothetical protein, at 3,073,243 to 3,076,728 _13190 CA264_13195: CA264_13195 - hypothetical protein, at 3,077,142 to 3,078,170 _13195 Position (kb) 3073 3074 3075 3076 3077Strain fitness (log2 ratio) -2 -1 0 1 2at 3072.313 kb on + strand, within CA264_13180at 3072.378 kb on + strand, within CA264_13180at 3072.379 kb on - strand, within CA264_13180at 3072.385 kb on + strand, within CA264_13180at 3072.386 kb on - strand, within CA264_13180at 3072.521 kb on - strand, within CA264_13180at 3072.581 kb on + strandat 3072.613 kb on + strandat 3072.647 kb on - strandat 3072.693 kb on + strandat 3072.694 kb on - strandat 3072.713 kb on + strandat 3072.714 kb on - strandat 3072.714 kb on - strandat 3072.754 kb on - strand, within CA264_13185at 3072.754 kb on - strand, within CA264_13185at 3072.754 kb on - strand, within CA264_13185at 3072.787 kb on + strand, within CA264_13185at 3072.819 kb on - strand, within CA264_13185at 3072.914 kb on + strand, within CA264_13185at 3072.998 kb on - strand, within CA264_13185at 3073.032 kb on + strand, within CA264_13185at 3073.076 kb on - strandat 3073.082 kb on + strandat 3073.082 kb on + strandat 3073.116 kb on - strandat 3073.118 kb on - strandat 3073.126 kb on + strandat 3073.161 kb on - strandat 3073.161 kb on - strandat 3073.166 kb on - strandat 3073.301 kb on + strandat 3073.301 kb on + strandat 3073.302 kb on - strandat 3073.302 kb on - strandat 3073.302 kb on - strandat 3073.383 kb on + strandat 3073.384 kb on - strandat 3073.384 kb on - strandat 3073.456 kb on + strandat 3073.456 kb on + strandat 3073.456 kb on + strandat 3073.456 kb on + strandat 3073.456 kb on + strandat 3073.457 kb on - strandat 3073.514 kb on - strandat 3073.514 kb on - strandat 3073.515 kb on + strandat 3073.527 kb on + strandat 3073.543 kb on + strandat 3073.544 kb on - strandat 3073.544 kb on - strandat 3073.573 kb on + strandat 3073.605 kb on - strand, within CA264_13190at 3073.675 kb on - strand, within CA264_13190at 3073.733 kb on + strand, within CA264_13190at 3073.908 kb on + strand, within CA264_13190at 3073.916 kb on - strand, within CA264_13190at 3073.929 kb on + strand, within CA264_13190at 3073.929 kb on + strand, within CA264_13190at 3073.929 kb on + strand, within CA264_13190at 3073.980 kb on + strand, within CA264_13190at 3073.981 kb on - strand, within CA264_13190at 3073.981 kb on - strand, within CA264_13190at 3073.981 kb on - strand, within CA264_13190at 3073.992 kb on + strand, within CA264_13190at 3073.992 kb on + strand, within CA264_13190at 3073.993 kb on - strand, within CA264_13190at 3073.994 kb on + strand, within CA264_13190at 3073.994 kb on + strand, within CA264_13190at 3073.994 kb on + strand, within CA264_13190at 3074.060 kb on + strand, within CA264_13190at 3074.061 kb on - strand, within CA264_13190at 3074.064 kb on + strand, within CA264_13190at 3074.065 kb on - strand, within CA264_13190at 3074.106 kb on - strand, within CA264_13190at 3074.119 kb on + strand, within CA264_13190at 3074.120 kb on - strand, within CA264_13190at 3074.133 kb on - strand, within CA264_13190at 3074.184 kb on - strand, within CA264_13190at 3074.216 kb on + strand, within CA264_13190at 3074.217 kb on - strand, within CA264_13190at 3074.217 kb on - strand, within CA264_13190at 3074.248 kb on + strand, within CA264_13190at 3074.249 kb on - strand, within CA264_13190at 3074.249 kb on - strand, within CA264_13190at 3074.256 kb on - strand, within CA264_13190at 3074.325 kb on + strand, within CA264_13190at 3074.325 kb on + strand, within CA264_13190at 3074.414 kb on + strand, within CA264_13190at 3074.453 kb on + strand, within CA264_13190at 3074.491 kb on + strand, within CA264_13190at 3074.552 kb on + strand, within CA264_13190at 3074.552 kb on + strand, within CA264_13190at 3074.620 kb on - strand, within CA264_13190at 3074.771 kb on - strand, within CA264_13190at 3074.858 kb on + strand, within CA264_13190at 3074.859 kb on - strand, within CA264_13190at 3074.976 kb on - strand, within CA264_13190at 3075.123 kb on + strand, within CA264_13190at 3075.129 kb on + strand, within CA264_13190at 3075.129 kb on + strand, within CA264_13190at 3075.130 kb on - strand, within CA264_13190at 3075.135 kb on + strand, within CA264_13190at 3075.138 kb on - strand, within CA264_13190at 3075.141 kb on + strand, within CA264_13190at 3075.171 kb on - strand, within CA264_13190at 3075.249 kb on + strand, within CA264_13190at 3075.249 kb on + strand, within CA264_13190at 3075.249 kb on + strand, within CA264_13190at 3075.249 kb on + strand, within CA264_13190at 3075.289 kb on + strand, within CA264_13190at 3075.296 kb on - strand, within CA264_13190at 3075.317 kb on + strand, within CA264_13190at 3075.317 kb on + strand, within CA264_13190at 3075.318 kb on - strand, within CA264_13190at 3075.336 kb on + strand, within CA264_13190at 3075.444 kb on + strand, within CA264_13190at 3075.468 kb on + strand, within CA264_13190at 3075.505 kb on + strand, within CA264_13190at 3075.513 kb on - strand, within CA264_13190at 3075.513 kb on - strand, within CA264_13190at 3075.538 kb on - strand, within CA264_13190at 3075.624 kb on + strand, within CA264_13190at 3075.624 kb on + strand, within CA264_13190at 3075.625 kb on - strand, within CA264_13190at 3075.666 kb on + strand, within CA264_13190at 3075.688 kb on + strand, within CA264_13190at 3075.688 kb on + strand, within CA264_13190at 3075.751 kb on + strand, within CA264_13190at 3075.776 kb on - strand, within CA264_13190at 3075.780 kb on + strand, within CA264_13190at 3075.780 kb on + strand, within CA264_13190at 3075.781 kb on - strand, within CA264_13190at 3075.782 kb on + strand, within CA264_13190at 3075.782 kb on + strand, within CA264_13190at 3075.782 kb on + strand, within CA264_13190at 3075.783 kb on - strand, within CA264_13190at 3075.783 kb on - strand, within CA264_13190at 3075.842 kb on - strand, within CA264_13190at 3076.006 kb on + strand, within CA264_13190at 3076.007 kb on - strand, within CA264_13190at 3076.007 kb on - strand, within CA264_13190at 3076.008 kb on + strand, within CA264_13190at 3076.008 kb on + strand, within CA264_13190at 3076.009 kb on - strand, within CA264_13190at 3076.012 kb on + strand, within CA264_13190at 3076.012 kb on + strand, within CA264_13190at 3076.013 kb on - strand, within CA264_13190at 3076.023 kb on + strand, within CA264_13190at 3076.039 kb on - strand, within CA264_13190at 3076.039 kb on - strand, within CA264_13190at 3076.045 kb on + strand, within CA264_13190at 3076.139 kb on - strand, within CA264_13190at 3076.150 kb on - strand, within CA264_13190at 3076.175 kb on + strand, within CA264_13190at 3076.180 kb on + strand, within CA264_13190at 3076.181 kb on - strand, within CA264_13190at 3076.197 kb on + strand, within CA264_13190at 3076.198 kb on - strand, within CA264_13190at 3076.198 kb on - strand, within CA264_13190at 3076.198 kb on - strand, within CA264_13190at 3076.303 kb on - strand, within CA264_13190at 3076.347 kb on + strand, within CA264_13190at 3076.363 kb on - strand, within CA264_13190at 3076.380 kb on + strandat 3076.424 kb on + strandat 3076.425 kb on - strandat 3076.425 kb on - strandat 3076.425 kb on - strandat 3076.425 kb on - strandat 3076.429 kb on + strandat 3076.430 kb on - strandat 3076.496 kb on + strandat 3076.499 kb on - strandat 3076.503 kb on + strandat 3076.504 kb on - strandat 3076.604 kb on - strandat 3076.604 kb on - strandat 3076.640 kb on + strandat 3076.640 kb on + strandat 3076.722 kb on + strandat 3076.789 kb on - strandat 3076.794 kb on + strandat 3076.794 kb on + strandat 3076.794 kb on + strandat 3076.795 kb on - strandat 3076.817 kb on - strandat 3076.864 kb on - strandat 3076.877 kb on - strandat 3076.878 kb on + strandat 3076.878 kb on + strandat 3076.879 kb on - strandat 3076.880 kb on + strandat 3076.880 kb on + strandat 3076.893 kb on - strandat 3076.933 kb on + strandat 3077.141 kb on + strandat 3077.248 kb on - strand, within CA264_13195at 3077.272 kb on + strand, within CA264_13195at 3077.272 kb on + strand, within CA264_13195at 3077.273 kb on - strand, within CA264_13195at 3077.279 kb on + strand, within CA264_13195at 3077.279 kb on + strand, within CA264_13195at 3077.359 kb on + strand, within CA264_13195at 3077.434 kb on - strand, within CA264_13195at 3077.472 kb on + strand, within CA264_13195at 3077.473 kb on - strand, within CA264_13195at 3077.473 kb on - strand, within CA264_13195at 3077.473 kb on - strand, within CA264_13195at 3077.475 kb on + strand, within CA264_13195at 3077.476 kb on - strand, within CA264_13195at 3077.583 kb on + strand, within CA264_13195at 3077.584 kb on - strand, within CA264_13195at 3077.620 kb on - strand, within CA264_13195at 3077.658 kb on + strand, within CA264_13195at 3077.659 kb on - strand, within CA264_13195

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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3,072,313 + CA264_13180 0.78 +0.9
3,072,378 + CA264_13180 0.82 +1.9
3,072,379 - CA264_13180 0.82 +0.2
3,072,385 + CA264_13180 0.82 -0.1
3,072,386 - CA264_13180 0.82 -0.5
3,072,521 - CA264_13180 0.90 -0.3
3,072,581 + -1.5
3,072,613 + +1.0
3,072,647 - +0.2
3,072,693 + +0.0
3,072,694 - -0.8
3,072,713 + -0.1
3,072,714 - -0.7
3,072,714 - +0.3
3,072,754 - CA264_13185 0.11 -0.3
3,072,754 - CA264_13185 0.11 -0.5
3,072,754 - CA264_13185 0.11 -0.5
3,072,787 + CA264_13185 0.20 -0.5
3,072,819 - CA264_13185 0.28 -0.7
3,072,914 + CA264_13185 0.52 -1.6
3,072,998 - CA264_13185 0.73 -0.1
3,073,032 + CA264_13185 0.82 -0.5
3,073,076 - +0.1
3,073,082 + -0.5
3,073,082 + +0.1
3,073,116 - +0.3
3,073,118 - -0.4
3,073,126 + +0.0
3,073,161 - +0.1
3,073,161 - -1.1
3,073,166 - -0.1
3,073,301 + -0.5
3,073,301 + -0.1
3,073,302 - -0.8
3,073,302 - -0.3
3,073,302 - -0.4
3,073,383 + +0.0
3,073,384 - +0.3
3,073,384 - +0.2
3,073,456 + -1.4
3,073,456 + -0.1
3,073,456 + +0.2
3,073,456 + +0.1
3,073,456 + -0.1
3,073,457 - -0.4
3,073,514 - +0.2
3,073,514 - -0.1
3,073,515 + -0.5
3,073,527 + -0.4
3,073,543 + -0.6
3,073,544 - +0.2
3,073,544 - -1.0
3,073,573 + -0.4
3,073,605 - CA264_13190 0.10 -0.2
3,073,675 - CA264_13190 0.12 +1.3
3,073,733 + CA264_13190 0.14 -0.1
3,073,908 + CA264_13190 0.19 +0.8
3,073,916 - CA264_13190 0.19 -1.0
3,073,929 + CA264_13190 0.20 -0.8
3,073,929 + CA264_13190 0.20 +0.1
3,073,929 + CA264_13190 0.20 +0.3
3,073,980 + CA264_13190 0.21 -0.2
3,073,981 - CA264_13190 0.21 +0.2
3,073,981 - CA264_13190 0.21 -0.2
3,073,981 - CA264_13190 0.21 +0.3
3,073,992 + CA264_13190 0.21 -0.0
3,073,992 + CA264_13190 0.21 -0.0
3,073,993 - CA264_13190 0.22 -0.4
3,073,994 + CA264_13190 0.22 +0.7
3,073,994 + CA264_13190 0.22 +0.1
3,073,994 + CA264_13190 0.22 +1.7
3,074,060 + CA264_13190 0.23 -0.3
3,074,061 - CA264_13190 0.23 +0.2
3,074,064 + CA264_13190 0.24 -1.7
3,074,065 - CA264_13190 0.24 -0.4
3,074,106 - CA264_13190 0.25 -0.2
3,074,119 + CA264_13190 0.25 -0.6
3,074,120 - CA264_13190 0.25 -0.7
3,074,133 - CA264_13190 0.26 +1.0
3,074,184 - CA264_13190 0.27 +0.9
3,074,216 + CA264_13190 0.28 +0.2
3,074,217 - CA264_13190 0.28 +0.2
3,074,217 - CA264_13190 0.28 +0.1
3,074,248 + CA264_13190 0.29 +0.6
3,074,249 - CA264_13190 0.29 +1.0
3,074,249 - CA264_13190 0.29 -0.3
3,074,256 - CA264_13190 0.29 +0.2
3,074,325 + CA264_13190 0.31 -0.3
3,074,325 + CA264_13190 0.31 -0.5
3,074,414 + CA264_13190 0.34 -1.1
3,074,453 + CA264_13190 0.35 -0.7
3,074,491 + CA264_13190 0.36 -1.1
3,074,552 + CA264_13190 0.38 -0.3
3,074,552 + CA264_13190 0.38 -1.6
3,074,620 - CA264_13190 0.40 -0.8
3,074,771 - CA264_13190 0.44 +0.3
3,074,858 + CA264_13190 0.46 -0.5
3,074,859 - CA264_13190 0.46 -0.4
3,074,976 - CA264_13190 0.50 +0.0
3,075,123 + CA264_13190 0.54 -0.2
3,075,129 + CA264_13190 0.54 -0.4
3,075,129 + CA264_13190 0.54 -2.5
3,075,130 - CA264_13190 0.54 +0.0
3,075,135 + CA264_13190 0.54 -0.5
3,075,138 - CA264_13190 0.54 -0.5
3,075,141 + CA264_13190 0.54 -0.4
3,075,171 - CA264_13190 0.55 -0.7
3,075,249 + CA264_13190 0.58 +0.2
3,075,249 + CA264_13190 0.58 +1.6
3,075,249 + CA264_13190 0.58 +0.3
3,075,249 + CA264_13190 0.58 +0.3
3,075,289 + CA264_13190 0.59 +0.1
3,075,296 - CA264_13190 0.59 -0.1
3,075,317 + CA264_13190 0.59 -0.5
3,075,317 + CA264_13190 0.59 -1.1
3,075,318 - CA264_13190 0.60 +0.9
3,075,336 + CA264_13190 0.60 +0.2
3,075,444 + CA264_13190 0.63 -0.2
3,075,468 + CA264_13190 0.64 -1.4
3,075,505 + CA264_13190 0.65 -0.8
3,075,513 - CA264_13190 0.65 -0.8
3,075,513 - CA264_13190 0.65 +0.6
3,075,538 - CA264_13190 0.66 -0.0
3,075,624 + CA264_13190 0.68 -0.5
3,075,624 + CA264_13190 0.68 +0.8
3,075,625 - CA264_13190 0.68 -0.0
3,075,666 + CA264_13190 0.70 +0.1
3,075,688 + CA264_13190 0.70 -0.3
3,075,688 + CA264_13190 0.70 +0.8
3,075,751 + CA264_13190 0.72 -0.1
3,075,776 - CA264_13190 0.73 +1.5
3,075,780 + CA264_13190 0.73 +0.3
3,075,780 + CA264_13190 0.73 +1.0
3,075,781 - CA264_13190 0.73 +0.3
3,075,782 + CA264_13190 0.73 -0.2
3,075,782 + CA264_13190 0.73 -0.3
3,075,782 + CA264_13190 0.73 +1.5
3,075,783 - CA264_13190 0.73 -0.5
3,075,783 - CA264_13190 0.73 -0.1
3,075,842 - CA264_13190 0.75 -0.1
3,076,006 + CA264_13190 0.79 +0.5
3,076,007 - CA264_13190 0.79 +0.1
3,076,007 - CA264_13190 0.79 -0.2
3,076,008 + CA264_13190 0.79 -0.3
3,076,008 + CA264_13190 0.79 +0.6
3,076,009 - CA264_13190 0.79 -0.8
3,076,012 + CA264_13190 0.79 +0.4
3,076,012 + CA264_13190 0.79 +1.3
3,076,013 - CA264_13190 0.79 -0.0
3,076,023 + CA264_13190 0.80 +0.8
3,076,039 - CA264_13190 0.80 +0.2
3,076,039 - CA264_13190 0.80 -0.4
3,076,045 + CA264_13190 0.80 +0.6
3,076,139 - CA264_13190 0.83 +0.4
3,076,150 - CA264_13190 0.83 +0.3
3,076,175 + CA264_13190 0.84 -0.3
3,076,180 + CA264_13190 0.84 -0.7
3,076,181 - CA264_13190 0.84 +0.4
3,076,197 + CA264_13190 0.85 -0.1
3,076,198 - CA264_13190 0.85 +1.5
3,076,198 - CA264_13190 0.85 +1.6
3,076,198 - CA264_13190 0.85 -0.8
3,076,303 - CA264_13190 0.88 +0.7
3,076,347 + CA264_13190 0.89 +1.1
3,076,363 - CA264_13190 0.90 -0.3
3,076,380 + -0.5
3,076,424 + +1.1
3,076,425 - +0.8
3,076,425 - +0.4
3,076,425 - +0.2
3,076,425 - -0.0
3,076,429 + -0.1
3,076,430 - +0.8
3,076,496 + +0.7
3,076,499 - -0.1
3,076,503 + +0.0
3,076,504 - +0.2
3,076,604 - -0.8
3,076,604 - +0.3
3,076,640 + +0.1
3,076,640 + -0.5
3,076,722 + +0.3
3,076,789 - +0.1
3,076,794 + -0.5
3,076,794 + -0.4
3,076,794 + +0.6
3,076,795 - -0.9
3,076,817 - +0.9
3,076,864 - -0.1
3,076,877 - -1.1
3,076,878 + -0.3
3,076,878 + -0.7
3,076,879 - -0.3
3,076,880 + -0.3
3,076,880 + -0.2
3,076,893 - -0.2
3,076,933 + +0.8
3,077,141 + -0.5
3,077,248 - CA264_13195 0.10 -0.2
3,077,272 + CA264_13195 0.13 +0.0
3,077,272 + CA264_13195 0.13 +0.1
3,077,273 - CA264_13195 0.13 +0.2
3,077,279 + CA264_13195 0.13 +0.6
3,077,279 + CA264_13195 0.13 -0.2
3,077,359 + CA264_13195 0.21 -0.2
3,077,434 - CA264_13195 0.28 -0.9
3,077,472 + CA264_13195 0.32 -0.5
3,077,473 - CA264_13195 0.32 -0.1
3,077,473 - CA264_13195 0.32 -0.1
3,077,473 - CA264_13195 0.32 +0.1
3,077,475 + CA264_13195 0.32 +0.3
3,077,476 - CA264_13195 0.32 -0.0
3,077,583 + CA264_13195 0.43 +0.4
3,077,584 - CA264_13195 0.43 +0.3
3,077,620 - CA264_13195 0.46 -0.3
3,077,658 + CA264_13195 0.50 -0.4
3,077,659 - CA264_13195 0.50 -1.0

Or see this region's nucleotide sequence