Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13020

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13015 and CA264_13020 are separated by 51 nucleotidesCA264_13020 and CA264_13025 are separated by 153 nucleotides CA264_13015: CA264_13015 - sensor histidine kinase, at 3,032,945 to 3,034,048 _13015 CA264_13020: CA264_13020 - hypothetical protein, at 3,034,100 to 3,034,342 _13020 CA264_13025: CA264_13025 - hypothetical protein, at 3,034,496 to 3,035,083 _13025 Position (kb) 3034 3035Strain fitness (log2 ratio) -1 0 1 2at 3033.254 kb on + strand, within CA264_13015at 3033.256 kb on + strand, within CA264_13015at 3033.321 kb on + strand, within CA264_13015at 3033.333 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.388 kb on - strand, within CA264_13015at 3033.457 kb on - strand, within CA264_13015at 3033.467 kb on - strand, within CA264_13015at 3033.615 kb on + strand, within CA264_13015at 3033.615 kb on + strand, within CA264_13015at 3033.616 kb on - strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.626 kb on - strand, within CA264_13015at 3033.626 kb on - strand, within CA264_13015at 3033.648 kb on + strand, within CA264_13015at 3033.649 kb on - strand, within CA264_13015at 3033.781 kb on - strand, within CA264_13015at 3033.798 kb on + strand, within CA264_13015at 3033.813 kb on + strand, within CA264_13015at 3033.814 kb on - strand, within CA264_13015at 3033.816 kb on + strand, within CA264_13015at 3033.823 kb on + strand, within CA264_13015at 3033.824 kb on - strand, within CA264_13015at 3033.882 kb on + strand, within CA264_13015at 3033.895 kb on + strand, within CA264_13015at 3033.896 kb on - strand, within CA264_13015at 3033.897 kb on + strand, within CA264_13015at 3033.897 kb on + strand, within CA264_13015at 3033.898 kb on - strand, within CA264_13015at 3033.898 kb on - strand, within CA264_13015at 3033.930 kb on + strand, within CA264_13015at 3033.930 kb on + strand, within CA264_13015at 3033.930 kb on + strand, within CA264_13015at 3033.930 kb on + strand, within CA264_13015at 3033.931 kb on - strand, within CA264_13015at 3033.974 kb on + strandat 3033.975 kb on - strandat 3033.979 kb on + strandat 3034.041 kb on - strandat 3034.051 kb on + strandat 3034.051 kb on + strandat 3034.052 kb on - strandat 3034.059 kb on + strandat 3034.062 kb on - strandat 3034.085 kb on + strandat 3034.086 kb on - strandat 3034.141 kb on - strand, within CA264_13020at 3034.148 kb on + strand, within CA264_13020at 3034.262 kb on + strand, within CA264_13020at 3034.336 kb on + strandat 3034.336 kb on + strandat 3034.359 kb on + strandat 3034.359 kb on + strandat 3034.360 kb on - strandat 3034.364 kb on - strandat 3034.366 kb on - strandat 3034.408 kb on - strandat 3034.479 kb on + strandat 3034.480 kb on - strandat 3034.480 kb on - strandat 3034.480 kb on - strandat 3034.509 kb on + strandat 3034.744 kb on - strand, within CA264_13025at 3034.826 kb on + strand, within CA264_13025at 3034.827 kb on - strand, within CA264_13025at 3034.854 kb on + strand, within CA264_13025at 3034.959 kb on - strand, within CA264_13025at 3035.048 kb on + strandat 3035.049 kb on - strandat 3035.049 kb on - strandat 3035.059 kb on - strandat 3035.059 kb on - strandat 3035.074 kb on + strandat 3035.081 kb on + strandat 3035.082 kb on - strandat 3035.130 kb on + strandat 3035.145 kb on + strandat 3035.148 kb on - strandat 3035.224 kb on + strandat 3035.273 kb on - strandat 3035.273 kb on - strandat 3035.273 kb on - strandat 3035.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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3,033,254 + CA264_13015 0.28 +1.5
3,033,256 + CA264_13015 0.28 +1.4
3,033,321 + CA264_13015 0.34 +1.1
3,033,333 + CA264_13015 0.35 +0.4
3,033,378 + CA264_13015 0.39 +0.7
3,033,378 + CA264_13015 0.39 +0.7
3,033,378 + CA264_13015 0.39 +0.6
3,033,388 - CA264_13015 0.40 +1.0
3,033,457 - CA264_13015 0.46 +1.6
3,033,467 - CA264_13015 0.47 +1.1
3,033,615 + CA264_13015 0.61 +1.7
3,033,615 + CA264_13015 0.61 +1.3
3,033,616 - CA264_13015 0.61 +1.5
3,033,625 + CA264_13015 0.62 -0.2
3,033,625 + CA264_13015 0.62 +0.3
3,033,625 + CA264_13015 0.62 +0.5
3,033,626 - CA264_13015 0.62 +0.4
3,033,626 - CA264_13015 0.62 +0.8
3,033,648 + CA264_13015 0.64 +1.3
3,033,649 - CA264_13015 0.64 -0.3
3,033,781 - CA264_13015 0.76 +1.2
3,033,798 + CA264_13015 0.77 +0.6
3,033,813 + CA264_13015 0.79 +0.9
3,033,814 - CA264_13015 0.79 +1.7
3,033,816 + CA264_13015 0.79 +0.5
3,033,823 + CA264_13015 0.80 +1.8
3,033,824 - CA264_13015 0.80 +0.9
3,033,882 + CA264_13015 0.85 +0.0
3,033,895 + CA264_13015 0.86 +0.1
3,033,896 - CA264_13015 0.86 +0.9
3,033,897 + CA264_13015 0.86 +1.1
3,033,897 + CA264_13015 0.86 -0.8
3,033,898 - CA264_13015 0.86 +1.8
3,033,898 - CA264_13015 0.86 +0.4
3,033,930 + CA264_13015 0.89 +0.7
3,033,930 + CA264_13015 0.89 +0.1
3,033,930 + CA264_13015 0.89 +0.9
3,033,930 + CA264_13015 0.89 +0.5
3,033,931 - CA264_13015 0.89 +1.2
3,033,974 + +1.0
3,033,975 - +0.1
3,033,979 + +0.2
3,034,041 - -0.5
3,034,051 + +0.1
3,034,051 + -0.3
3,034,052 - +0.7
3,034,059 + +0.7
3,034,062 - +0.1
3,034,085 + +0.2
3,034,086 - -0.8
3,034,141 - CA264_13020 0.17 +0.1
3,034,148 + CA264_13020 0.20 -1.7
3,034,262 + CA264_13020 0.67 -0.0
3,034,336 + +0.9
3,034,336 + -0.6
3,034,359 + -1.5
3,034,359 + +0.0
3,034,360 - -0.3
3,034,364 - +0.4
3,034,366 - +0.5
3,034,408 - -0.3
3,034,479 + +0.2
3,034,480 - +0.1
3,034,480 - +0.5
3,034,480 - -0.5
3,034,509 + -1.3
3,034,744 - CA264_13025 0.42 -1.1
3,034,826 + CA264_13025 0.56 +0.4
3,034,827 - CA264_13025 0.56 +1.4
3,034,854 + CA264_13025 0.61 +0.2
3,034,959 - CA264_13025 0.79 +0.1
3,035,048 + -0.3
3,035,049 - -0.3
3,035,049 - -0.3
3,035,059 - -0.2
3,035,059 - -0.4
3,035,074 + +0.3
3,035,081 + -0.5
3,035,082 - -0.3
3,035,130 + -0.3
3,035,145 + -0.1
3,035,148 - +0.2
3,035,224 + +0.6
3,035,273 - +0.7
3,035,273 - -0.8
3,035,273 - +0.4
3,035,318 - -0.5

Or see this region's nucleotide sequence