Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11115

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11110 and CA264_11115 are separated by 45 nucleotidesCA264_11115 and CA264_11120 are separated by 48 nucleotides CA264_11110: CA264_11110 - SNase-like nuclease, at 2,565,635 to 2,566,471 _11110 CA264_11115: CA264_11115 - hypothetical protein, at 2,566,517 to 2,566,942 _11115 CA264_11120: CA264_11120 - universal stress protein UspA, at 2,566,991 to 2,567,845 _11120 Position (kb) 2566 2567Strain fitness (log2 ratio) -1 0 1 2at 2565.551 kb on + strandat 2565.551 kb on + strandat 2565.552 kb on - strandat 2565.552 kb on - strandat 2565.553 kb on + strandat 2565.553 kb on + strandat 2565.553 kb on + strandat 2565.554 kb on - strandat 2565.557 kb on + strandat 2565.651 kb on - strandat 2565.738 kb on + strand, within CA264_11110at 2565.738 kb on + strand, within CA264_11110at 2565.739 kb on - strand, within CA264_11110at 2565.739 kb on - strand, within CA264_11110at 2565.748 kb on + strand, within CA264_11110at 2565.748 kb on + strand, within CA264_11110at 2565.748 kb on + strand, within CA264_11110at 2565.749 kb on - strand, within CA264_11110at 2565.861 kb on + strand, within CA264_11110at 2565.861 kb on + strand, within CA264_11110at 2565.861 kb on + strand, within CA264_11110at 2565.862 kb on - strand, within CA264_11110at 2565.862 kb on - strand, within CA264_11110at 2565.865 kb on - strand, within CA264_11110at 2565.927 kb on + strand, within CA264_11110at 2565.928 kb on - strand, within CA264_11110at 2565.929 kb on + strand, within CA264_11110at 2565.929 kb on + strand, within CA264_11110at 2565.941 kb on - strand, within CA264_11110at 2565.983 kb on + strand, within CA264_11110at 2565.999 kb on + strand, within CA264_11110at 2566.148 kb on - strand, within CA264_11110at 2566.323 kb on - strand, within CA264_11110at 2566.353 kb on - strand, within CA264_11110at 2566.353 kb on - strand, within CA264_11110at 2566.359 kb on + strand, within CA264_11110at 2566.360 kb on - strand, within CA264_11110at 2566.483 kb on + strandat 2566.484 kb on - strandat 2566.511 kb on - strandat 2566.511 kb on - strandat 2566.514 kb on + strandat 2566.514 kb on + strandat 2566.514 kb on + strandat 2566.514 kb on + strandat 2566.515 kb on - strandat 2566.515 kb on - strandat 2566.517 kb on - strandat 2566.536 kb on + strandat 2566.537 kb on - strandat 2566.671 kb on + strand, within CA264_11115at 2566.672 kb on - strand, within CA264_11115at 2566.766 kb on - strand, within CA264_11115at 2566.813 kb on + strand, within CA264_11115at 2566.868 kb on + strand, within CA264_11115at 2566.896 kb on + strand, within CA264_11115at 2566.897 kb on - strand, within CA264_11115at 2566.897 kb on - strand, within CA264_11115at 2566.903 kb on + strandat 2566.904 kb on - strandat 2566.932 kb on + strandat 2566.933 kb on - strandat 2566.941 kb on - strandat 2566.992 kb on + strandat 2567.038 kb on - strandat 2567.066 kb on - strandat 2567.124 kb on - strand, within CA264_11120at 2567.144 kb on + strand, within CA264_11120at 2567.352 kb on + strand, within CA264_11120at 2567.353 kb on - strand, within CA264_11120at 2567.353 kb on - strand, within CA264_11120at 2567.517 kb on + strand, within CA264_11120at 2567.571 kb on - strand, within CA264_11120at 2567.571 kb on - strand, within CA264_11120at 2567.578 kb on - strand, within CA264_11120at 2567.633 kb on - strand, within CA264_11120at 2567.778 kb on + strandat 2567.778 kb on + strandat 2567.778 kb on + strandat 2567.779 kb on - strandat 2567.787 kb on + strandat 2567.788 kb on - strandat 2567.832 kb on - strandat 2567.885 kb on + strandat 2567.886 kb on - strandat 2567.887 kb on + strandat 2567.898 kb on + strandat 2567.899 kb on - strandat 2567.901 kb on + strandat 2567.902 kb on - strandat 2567.905 kb on + strandat 2567.906 kb on - strandat 2567.906 kb on - strandat 2567.906 kb on - strandat 2567.906 kb on - strandat 2567.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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2,565,551 + +0.9
2,565,551 + +0.2
2,565,552 - +0.7
2,565,552 - +0.1
2,565,553 + +0.4
2,565,553 + -1.1
2,565,553 + +0.1
2,565,554 - +0.2
2,565,557 + -0.8
2,565,651 - -1.5
2,565,738 + CA264_11110 0.12 -0.8
2,565,738 + CA264_11110 0.12 -0.3
2,565,739 - CA264_11110 0.12 -0.9
2,565,739 - CA264_11110 0.12 +0.3
2,565,748 + CA264_11110 0.14 -0.2
2,565,748 + CA264_11110 0.14 -0.4
2,565,748 + CA264_11110 0.14 -0.8
2,565,749 - CA264_11110 0.14 -0.5
2,565,861 + CA264_11110 0.27 +0.6
2,565,861 + CA264_11110 0.27 +1.1
2,565,861 + CA264_11110 0.27 -0.2
2,565,862 - CA264_11110 0.27 -0.5
2,565,862 - CA264_11110 0.27 +0.0
2,565,865 - CA264_11110 0.27 -0.3
2,565,927 + CA264_11110 0.35 +0.9
2,565,928 - CA264_11110 0.35 +0.0
2,565,929 + CA264_11110 0.35 +1.0
2,565,929 + CA264_11110 0.35 +0.1
2,565,941 - CA264_11110 0.37 -1.0
2,565,983 + CA264_11110 0.42 -0.3
2,565,999 + CA264_11110 0.43 +2.6
2,566,148 - CA264_11110 0.61 +0.1
2,566,323 - CA264_11110 0.82 +0.5
2,566,353 - CA264_11110 0.86 +1.9
2,566,353 - CA264_11110 0.86 +1.3
2,566,359 + CA264_11110 0.86 -0.6
2,566,360 - CA264_11110 0.87 -0.4
2,566,483 + +0.3
2,566,484 - -0.4
2,566,511 - +0.0
2,566,511 - -0.3
2,566,514 + +0.1
2,566,514 + -0.0
2,566,514 + -0.2
2,566,514 + +0.6
2,566,515 - +0.6
2,566,515 - -0.4
2,566,517 - -0.2
2,566,536 + +0.6
2,566,537 - -0.3
2,566,671 + CA264_11115 0.36 -0.4
2,566,672 - CA264_11115 0.36 +0.3
2,566,766 - CA264_11115 0.58 -0.1
2,566,813 + CA264_11115 0.69 +0.2
2,566,868 + CA264_11115 0.82 +0.7
2,566,896 + CA264_11115 0.89 +0.7
2,566,897 - CA264_11115 0.89 -0.4
2,566,897 - CA264_11115 0.89 +0.1
2,566,903 + +0.3
2,566,904 - -0.1
2,566,932 + +0.7
2,566,933 - +0.1
2,566,941 - +0.0
2,566,992 + +0.7
2,567,038 - +0.4
2,567,066 - -0.2
2,567,124 - CA264_11120 0.16 -0.3
2,567,144 + CA264_11120 0.18 -0.0
2,567,352 + CA264_11120 0.42 +0.1
2,567,353 - CA264_11120 0.42 -1.3
2,567,353 - CA264_11120 0.42 -0.1
2,567,517 + CA264_11120 0.62 -0.8
2,567,571 - CA264_11120 0.68 -1.4
2,567,571 - CA264_11120 0.68 +0.8
2,567,578 - CA264_11120 0.69 +0.2
2,567,633 - CA264_11120 0.75 -0.1
2,567,778 + -0.8
2,567,778 + -0.7
2,567,778 + -0.5
2,567,779 - -1.4
2,567,787 + -0.1
2,567,788 - -0.1
2,567,832 - -0.2
2,567,885 + -0.7
2,567,886 - -0.1
2,567,887 + -0.4
2,567,898 + -0.4
2,567,899 - -0.8
2,567,901 + +0.2
2,567,902 - +0.3
2,567,905 + -0.4
2,567,906 - -0.4
2,567,906 - +0.1
2,567,906 - +0.1
2,567,906 - +0.4
2,567,918 - -0.3

Or see this region's nucleotide sequence