Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09575

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09570 and CA264_09575 are separated by 173 nucleotidesCA264_09575 and CA264_09580 are separated by 420 nucleotidesCA264_09580 and CA264_09585 are separated by 86 nucleotides CA264_09570: CA264_09570 - amino acid permease, at 2,235,074 to 2,236,567 _09570 CA264_09575: CA264_09575 - hypothetical protein, at 2,236,741 to 2,237,169 _09575 CA264_09580: CA264_09580 - hypothetical protein, at 2,237,590 to 2,237,919 _09580 CA264_09585: CA264_09585 - hypothetical protein, at 2,238,006 to 2,238,455 _09585 Position (kb) 2236 2237 2238Strain fitness (log2 ratio) -2 -1 0 1 2at 2235.920 kb on - strand, within CA264_09570at 2235.936 kb on - strand, within CA264_09570at 2235.939 kb on + strand, within CA264_09570at 2235.940 kb on - strand, within CA264_09570at 2236.046 kb on + strand, within CA264_09570at 2236.100 kb on - strand, within CA264_09570at 2236.100 kb on - strand, within CA264_09570at 2236.100 kb on - strand, within CA264_09570at 2236.173 kb on + strand, within CA264_09570at 2236.196 kb on + strand, within CA264_09570at 2236.196 kb on + strand, within CA264_09570at 2236.319 kb on - strand, within CA264_09570at 2236.321 kb on + strand, within CA264_09570at 2236.322 kb on - strand, within CA264_09570at 2236.324 kb on + strand, within CA264_09570at 2236.401 kb on + strand, within CA264_09570at 2236.405 kb on + strand, within CA264_09570at 2236.406 kb on - strand, within CA264_09570at 2236.488 kb on - strandat 2236.496 kb on + strandat 2236.497 kb on - strandat 2236.497 kb on - strandat 2236.565 kb on + strandat 2236.565 kb on + strandat 2236.565 kb on + strandat 2236.566 kb on - strandat 2236.569 kb on - strandat 2236.582 kb on - strandat 2236.639 kb on + strandat 2236.640 kb on - strandat 2236.641 kb on + strandat 2236.641 kb on + strandat 2236.642 kb on - strandat 2236.681 kb on - strandat 2236.694 kb on + strandat 2236.713 kb on - strandat 2236.724 kb on - strandat 2236.724 kb on - strandat 2236.726 kb on - strandat 2236.854 kb on - strand, within CA264_09575at 2236.854 kb on - strand, within CA264_09575at 2236.854 kb on - strand, within CA264_09575at 2236.859 kb on - strand, within CA264_09575at 2236.859 kb on - strand, within CA264_09575at 2236.965 kb on - strand, within CA264_09575at 2236.976 kb on + strand, within CA264_09575at 2236.976 kb on + strand, within CA264_09575at 2236.976 kb on + strand, within CA264_09575at 2236.976 kb on + strand, within CA264_09575at 2236.977 kb on - strand, within CA264_09575at 2236.977 kb on - strand, within CA264_09575at 2237.013 kb on + strand, within CA264_09575at 2237.033 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.112 kb on + strand, within CA264_09575at 2237.113 kb on - strand, within CA264_09575at 2237.113 kb on - strand, within CA264_09575at 2237.115 kb on - strand, within CA264_09575at 2237.221 kb on - strandat 2237.370 kb on + strandat 2237.379 kb on - strandat 2237.421 kb on - strandat 2237.451 kb on + strandat 2237.514 kb on - strandat 2237.523 kb on - strandat 2237.587 kb on - strandat 2237.671 kb on - strand, within CA264_09580at 2237.676 kb on + strand, within CA264_09580at 2237.677 kb on - strand, within CA264_09580at 2237.677 kb on - strand, within CA264_09580at 2237.677 kb on - strand, within CA264_09580at 2237.678 kb on + strand, within CA264_09580at 2237.678 kb on + strand, within CA264_09580at 2237.678 kb on + strand, within CA264_09580at 2237.679 kb on - strand, within CA264_09580at 2237.679 kb on - strand, within CA264_09580at 2237.689 kb on + strand, within CA264_09580at 2237.711 kb on - strand, within CA264_09580at 2237.731 kb on - strand, within CA264_09580at 2237.770 kb on + strand, within CA264_09580at 2237.790 kb on + strand, within CA264_09580at 2237.790 kb on + strand, within CA264_09580at 2237.790 kb on + strand, within CA264_09580at 2237.791 kb on - strand, within CA264_09580at 2237.795 kb on + strand, within CA264_09580at 2237.796 kb on - strand, within CA264_09580at 2237.797 kb on + strand, within CA264_09580at 2237.797 kb on + strand, within CA264_09580at 2237.797 kb on + strand, within CA264_09580at 2237.797 kb on + strand, within CA264_09580at 2237.798 kb on - strand, within CA264_09580at 2237.812 kb on - strand, within CA264_09580at 2237.817 kb on + strand, within CA264_09580at 2237.818 kb on - strand, within CA264_09580at 2237.831 kb on - strand, within CA264_09580at 2237.940 kb on - strandat 2237.944 kb on + strandat 2237.944 kb on + strandat 2237.945 kb on - strandat 2237.991 kb on + strandat 2238.012 kb on + strandat 2238.060 kb on + strand, within CA264_09585at 2238.120 kb on + strand, within CA264_09585at 2238.120 kb on + strand, within CA264_09585at 2238.120 kb on + strand, within CA264_09585at 2238.121 kb on - strand, within CA264_09585at 2238.167 kb on + strand, within CA264_09585

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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2,235,920 - CA264_09570 0.57 +0.3
2,235,936 - CA264_09570 0.58 -0.5
2,235,939 + CA264_09570 0.58 +0.1
2,235,940 - CA264_09570 0.58 +0.8
2,236,046 + CA264_09570 0.65 -1.2
2,236,100 - CA264_09570 0.69 -0.4
2,236,100 - CA264_09570 0.69 -1.8
2,236,100 - CA264_09570 0.69 +0.6
2,236,173 + CA264_09570 0.74 +1.0
2,236,196 + CA264_09570 0.75 +1.8
2,236,196 + CA264_09570 0.75 -1.5
2,236,319 - CA264_09570 0.83 +1.3
2,236,321 + CA264_09570 0.83 -0.5
2,236,322 - CA264_09570 0.84 -0.3
2,236,324 + CA264_09570 0.84 -0.3
2,236,401 + CA264_09570 0.89 -0.4
2,236,405 + CA264_09570 0.89 +0.8
2,236,406 - CA264_09570 0.89 +1.2
2,236,488 - -0.8
2,236,496 + +1.1
2,236,497 - +0.4
2,236,497 - -0.1
2,236,565 + +0.3
2,236,565 + +0.0
2,236,565 + +0.2
2,236,566 - +0.4
2,236,569 - -1.1
2,236,582 - +0.0
2,236,639 + -0.2
2,236,640 - -0.2
2,236,641 + -0.7
2,236,641 + -0.6
2,236,642 - -0.2
2,236,681 - -0.8
2,236,694 + +1.1
2,236,713 - -0.5
2,236,724 - -0.2
2,236,724 - +0.1
2,236,726 - -0.6
2,236,854 - CA264_09575 0.26 -0.1
2,236,854 - CA264_09575 0.26 -0.9
2,236,854 - CA264_09575 0.26 -1.2
2,236,859 - CA264_09575 0.28 +0.1
2,236,859 - CA264_09575 0.28 -0.4
2,236,965 - CA264_09575 0.52 -1.1
2,236,976 + CA264_09575 0.55 -0.9
2,236,976 + CA264_09575 0.55 -1.7
2,236,976 + CA264_09575 0.55 -0.2
2,236,976 + CA264_09575 0.55 -0.7
2,236,977 - CA264_09575 0.55 -0.9
2,236,977 - CA264_09575 0.55 -1.4
2,237,013 + CA264_09575 0.63 +0.0
2,237,033 - CA264_09575 0.68 +0.0
2,237,106 - CA264_09575 0.85 -0.1
2,237,106 - CA264_09575 0.85 -0.4
2,237,106 - CA264_09575 0.85 +0.0
2,237,112 + CA264_09575 0.86 +0.2
2,237,113 - CA264_09575 0.87 -0.3
2,237,113 - CA264_09575 0.87 -0.5
2,237,115 - CA264_09575 0.87 -0.0
2,237,221 - +0.6
2,237,370 + +0.1
2,237,379 - -0.2
2,237,421 - -0.1
2,237,451 + -0.8
2,237,514 - +0.9
2,237,523 - -0.6
2,237,587 - +0.4
2,237,671 - CA264_09580 0.25 -0.1
2,237,676 + CA264_09580 0.26 -0.1
2,237,677 - CA264_09580 0.26 -0.1
2,237,677 - CA264_09580 0.26 -0.6
2,237,677 - CA264_09580 0.26 -0.6
2,237,678 + CA264_09580 0.27 +0.6
2,237,678 + CA264_09580 0.27 -1.0
2,237,678 + CA264_09580 0.27 +0.5
2,237,679 - CA264_09580 0.27 +0.2
2,237,679 - CA264_09580 0.27 +0.4
2,237,689 + CA264_09580 0.30 +1.1
2,237,711 - CA264_09580 0.37 -0.2
2,237,731 - CA264_09580 0.43 +1.2
2,237,770 + CA264_09580 0.55 +0.2
2,237,790 + CA264_09580 0.61 +0.4
2,237,790 + CA264_09580 0.61 -0.1
2,237,790 + CA264_09580 0.61 -0.9
2,237,791 - CA264_09580 0.61 -0.1
2,237,795 + CA264_09580 0.62 +1.1
2,237,796 - CA264_09580 0.62 +0.2
2,237,797 + CA264_09580 0.63 -0.4
2,237,797 + CA264_09580 0.63 -0.3
2,237,797 + CA264_09580 0.63 -1.5
2,237,797 + CA264_09580 0.63 -0.7
2,237,798 - CA264_09580 0.63 +0.7
2,237,812 - CA264_09580 0.67 -0.3
2,237,817 + CA264_09580 0.69 -0.4
2,237,818 - CA264_09580 0.69 +0.2
2,237,831 - CA264_09580 0.73 +0.1
2,237,940 - -0.4
2,237,944 + +0.0
2,237,944 + -0.0
2,237,945 - -0.1
2,237,991 + -0.2
2,238,012 + -0.1
2,238,060 + CA264_09585 0.12 -0.2
2,238,120 + CA264_09585 0.25 +0.0
2,238,120 + CA264_09585 0.25 -0.5
2,238,120 + CA264_09585 0.25 +0.5
2,238,121 - CA264_09585 0.26 -1.4
2,238,167 + CA264_09585 0.36 +0.4

Or see this region's nucleotide sequence