Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07380

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07375 and CA264_07380 are separated by 91 nucleotidesCA264_07380 and CA264_07385 are separated by 224 nucleotidesCA264_07385 and CA264_07390 are separated by 102 nucleotidesCA264_07390 and CA264_07395 are separated by 24 nucleotides CA264_07375: CA264_07375 - NADH-dependent alcohol dehydrogenase, at 1,700,069 to 1,701,226 _07375 CA264_07380: CA264_07380 - NADP-dependent oxidoreductase, at 1,701,318 to 1,702,331 _07380 CA264_07385: CA264_07385 - 50S ribosomal protein L20, at 1,702,556 to 1,702,900 _07385 CA264_07390: CA264_07390 - 50S ribosomal protein L35, at 1,703,003 to 1,703,197 _07390 CA264_07395: CA264_07395 - translation initiation factor IF-3, at 1,703,222 to 1,703,743 _07395 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -1 0 1at 1700.348 kb on - strand, within CA264_07375at 1700.430 kb on + strand, within CA264_07375at 1700.515 kb on + strand, within CA264_07375at 1700.520 kb on + strand, within CA264_07375at 1700.625 kb on + strand, within CA264_07375at 1700.626 kb on - strand, within CA264_07375at 1700.690 kb on - strand, within CA264_07375at 1700.690 kb on - strand, within CA264_07375at 1700.765 kb on - strand, within CA264_07375at 1700.821 kb on + strand, within CA264_07375at 1700.933 kb on + strand, within CA264_07375at 1700.952 kb on - strand, within CA264_07375at 1700.993 kb on + strand, within CA264_07375at 1700.993 kb on + strand, within CA264_07375at 1700.993 kb on + strand, within CA264_07375at 1701.015 kb on + strand, within CA264_07375at 1701.041 kb on - strand, within CA264_07375at 1701.055 kb on - strand, within CA264_07375at 1701.121 kb on - strandat 1701.162 kb on - strandat 1701.208 kb on - strandat 1701.233 kb on + strandat 1701.236 kb on + strandat 1701.245 kb on + strandat 1701.258 kb on + strandat 1701.282 kb on + strandat 1701.282 kb on + strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.288 kb on + strandat 1701.289 kb on - strandat 1701.289 kb on - strandat 1701.299 kb on + strandat 1701.300 kb on - strandat 1701.313 kb on + strandat 1701.505 kb on - strand, within CA264_07380at 1701.584 kb on + strand, within CA264_07380at 1701.586 kb on + strand, within CA264_07380at 1701.587 kb on - strand, within CA264_07380at 1701.587 kb on - strand, within CA264_07380at 1701.589 kb on + strand, within CA264_07380at 1701.590 kb on - strand, within CA264_07380at 1701.640 kb on + strand, within CA264_07380at 1701.641 kb on - strand, within CA264_07380at 1701.655 kb on - strand, within CA264_07380at 1701.679 kb on + strand, within CA264_07380at 1701.679 kb on + strand, within CA264_07380at 1701.680 kb on - strand, within CA264_07380at 1701.680 kb on - strand, within CA264_07380at 1701.682 kb on - strand, within CA264_07380at 1701.682 kb on - strand, within CA264_07380at 1701.741 kb on - strand, within CA264_07380at 1702.115 kb on + strand, within CA264_07380at 1702.115 kb on + strand, within CA264_07380at 1702.124 kb on + strand, within CA264_07380at 1702.128 kb on - strand, within CA264_07380at 1702.144 kb on + strand, within CA264_07380at 1702.145 kb on - strand, within CA264_07380at 1702.156 kb on + strand, within CA264_07380at 1702.156 kb on + strand, within CA264_07380at 1702.157 kb on - strand, within CA264_07380at 1702.157 kb on - strand, within CA264_07380at 1702.163 kb on + strand, within CA264_07380at 1702.163 kb on + strand, within CA264_07380at 1702.190 kb on - strand, within CA264_07380at 1702.208 kb on - strand, within CA264_07380at 1702.312 kb on - strandat 1702.314 kb on - strandat 1702.314 kb on - strandat 1702.316 kb on + strandat 1702.317 kb on - strandat 1702.317 kb on - strandat 1702.317 kb on - strandat 1702.317 kb on - strandat 1702.322 kb on + strandat 1702.354 kb on + strandat 1702.410 kb on - strandat 1702.425 kb on - strandat 1702.429 kb on - strandat 1702.447 kb on + strandat 1702.494 kb on + strandat 1702.495 kb on - strandat 1702.542 kb on - strandat 1702.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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1,700,348 - CA264_07375 0.24 -0.3
1,700,430 + CA264_07375 0.31 +1.6
1,700,515 + CA264_07375 0.39 +0.6
1,700,520 + CA264_07375 0.39 +0.5
1,700,625 + CA264_07375 0.48 -0.6
1,700,626 - CA264_07375 0.48 +0.7
1,700,690 - CA264_07375 0.54 +0.5
1,700,690 - CA264_07375 0.54 -0.5
1,700,765 - CA264_07375 0.60 -0.1
1,700,821 + CA264_07375 0.65 +0.3
1,700,933 + CA264_07375 0.75 +0.1
1,700,952 - CA264_07375 0.76 -0.4
1,700,993 + CA264_07375 0.80 -0.8
1,700,993 + CA264_07375 0.80 +0.3
1,700,993 + CA264_07375 0.80 +0.8
1,701,015 + CA264_07375 0.82 +0.4
1,701,041 - CA264_07375 0.84 +0.2
1,701,055 - CA264_07375 0.85 -0.2
1,701,121 - -1.1
1,701,162 - -0.2
1,701,208 - +0.0
1,701,233 + -0.2
1,701,236 + -0.1
1,701,245 + -0.1
1,701,258 + +0.8
1,701,282 + -0.8
1,701,282 + -0.1
1,701,283 - -0.7
1,701,283 - -0.5
1,701,283 - +0.3
1,701,288 + +0.3
1,701,289 - -0.6
1,701,289 - -0.7
1,701,299 + -1.2
1,701,300 - -0.1
1,701,313 + -1.1
1,701,505 - CA264_07380 0.18 -0.6
1,701,584 + CA264_07380 0.26 -0.1
1,701,586 + CA264_07380 0.26 -0.8
1,701,587 - CA264_07380 0.27 -0.9
1,701,587 - CA264_07380 0.27 -0.0
1,701,589 + CA264_07380 0.27 +0.1
1,701,590 - CA264_07380 0.27 -0.2
1,701,640 + CA264_07380 0.32 -0.3
1,701,641 - CA264_07380 0.32 +0.2
1,701,655 - CA264_07380 0.33 -0.4
1,701,679 + CA264_07380 0.36 -0.3
1,701,679 + CA264_07380 0.36 -0.3
1,701,680 - CA264_07380 0.36 +1.3
1,701,680 - CA264_07380 0.36 -0.5
1,701,682 - CA264_07380 0.36 +0.6
1,701,682 - CA264_07380 0.36 -1.1
1,701,741 - CA264_07380 0.42 -0.3
1,702,115 + CA264_07380 0.79 -0.3
1,702,115 + CA264_07380 0.79 -0.8
1,702,124 + CA264_07380 0.79 +0.0
1,702,128 - CA264_07380 0.80 -0.7
1,702,144 + CA264_07380 0.81 -0.1
1,702,145 - CA264_07380 0.82 -1.1
1,702,156 + CA264_07380 0.83 +0.5
1,702,156 + CA264_07380 0.83 +0.3
1,702,157 - CA264_07380 0.83 -0.1
1,702,157 - CA264_07380 0.83 -0.1
1,702,163 + CA264_07380 0.83 +0.4
1,702,163 + CA264_07380 0.83 +0.3
1,702,190 - CA264_07380 0.86 -0.3
1,702,208 - CA264_07380 0.88 -0.9
1,702,312 - -1.3
1,702,314 - +0.2
1,702,314 - +1.4
1,702,316 + +0.0
1,702,317 - -0.1
1,702,317 - -0.4
1,702,317 - -0.2
1,702,317 - +0.2
1,702,322 + +0.3
1,702,354 + +0.8
1,702,410 - -1.0
1,702,425 - -0.8
1,702,429 - -0.1
1,702,447 + +0.0
1,702,494 + -0.5
1,702,495 - -0.1
1,702,542 - -0.6
1,702,542 - -0.8

Or see this region's nucleotide sequence