Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07050

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07045 and CA264_07050 are separated by 759 nucleotidesCA264_07050 and CA264_07055 are separated by 106 nucleotides CA264_07045: CA264_07045 - TetR family transcriptional regulator, at 1,624,306 to 1,624,896 _07045 CA264_07050: CA264_07050 - serine acetyltransferase, at 1,625,656 to 1,626,192 _07050 CA264_07055: CA264_07055 - hypothetical protein, at 1,626,299 to 1,627,135 _07055 Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -1 0 1 2at 1624.747 kb on - strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.754 kb on + strand, within CA264_07045at 1624.754 kb on + strand, within CA264_07045at 1624.755 kb on - strand, within CA264_07045at 1624.800 kb on + strand, within CA264_07045at 1624.829 kb on + strand, within CA264_07045at 1625.007 kb on + strandat 1625.008 kb on - strandat 1625.008 kb on - strandat 1625.075 kb on + strandat 1625.088 kb on + strandat 1625.088 kb on + strandat 1625.089 kb on - strandat 1625.089 kb on - strandat 1625.089 kb on - strandat 1625.155 kb on + strandat 1625.167 kb on + strandat 1625.205 kb on + strandat 1625.206 kb on - strandat 1625.206 kb on - strandat 1625.208 kb on - strandat 1625.218 kb on - strandat 1625.221 kb on + strandat 1625.222 kb on - strandat 1625.268 kb on + strandat 1625.268 kb on + strandat 1625.269 kb on - strandat 1625.269 kb on - strandat 1625.269 kb on - strandat 1625.361 kb on - strandat 1625.391 kb on - strandat 1625.437 kb on - strandat 1625.464 kb on + strandat 1625.487 kb on + strandat 1625.574 kb on + strandat 1625.574 kb on + strandat 1625.574 kb on + strandat 1625.644 kb on + strandat 1625.653 kb on + strandat 1625.654 kb on - strandat 1625.662 kb on + strandat 1625.663 kb on - strandat 1625.700 kb on + strandat 1625.817 kb on + strand, within CA264_07050at 1625.818 kb on - strandat 1625.823 kb on + strand, within CA264_07050at 1625.823 kb on + strand, within CA264_07050at 1625.824 kb on - strand, within CA264_07050at 1625.824 kb on - strand, within CA264_07050at 1625.850 kb on - strand, within CA264_07050at 1625.850 kb on - strand, within CA264_07050at 1625.850 kb on - strand, within CA264_07050at 1625.867 kb on + strand, within CA264_07050at 1625.906 kb on + strand, within CA264_07050at 1625.907 kb on - strand, within CA264_07050at 1625.907 kb on - strand, within CA264_07050at 1625.907 kb on - strand, within CA264_07050at 1625.975 kb on - strand, within CA264_07050at 1625.991 kb on - strand, within CA264_07050at 1625.991 kb on - strand, within CA264_07050at 1626.023 kb on + strand, within CA264_07050at 1626.023 kb on + strand, within CA264_07050at 1626.024 kb on - strand, within CA264_07050at 1626.024 kb on - strand, within CA264_07050at 1626.024 kb on - strand, within CA264_07050at 1626.086 kb on + strand, within CA264_07050at 1626.086 kb on + strand, within CA264_07050at 1626.292 kb on - strandat 1626.301 kb on - strandat 1626.301 kb on - strandat 1626.315 kb on + strandat 1626.354 kb on - strandat 1626.380 kb on + strandat 1626.380 kb on + strandat 1626.380 kb on + strandat 1626.427 kb on + strand, within CA264_07055at 1626.429 kb on + strand, within CA264_07055at 1626.429 kb on + strand, within CA264_07055at 1626.429 kb on + strand, within CA264_07055at 1626.429 kb on + strand, within CA264_07055at 1626.429 kb on + strand, within CA264_07055at 1626.430 kb on - strand, within CA264_07055at 1626.430 kb on - strand, within CA264_07055at 1626.430 kb on - strand, within CA264_07055at 1626.450 kb on + strand, within CA264_07055at 1626.451 kb on - strand, within CA264_07055at 1626.484 kb on + strand, within CA264_07055at 1626.485 kb on - strand, within CA264_07055at 1626.486 kb on + strand, within CA264_07055at 1626.486 kb on + strand, within CA264_07055at 1626.487 kb on - strand, within CA264_07055at 1626.487 kb on - strand, within CA264_07055at 1626.487 kb on - strand, within CA264_07055at 1626.497 kb on + strand, within CA264_07055at 1626.498 kb on - strand, within CA264_07055at 1626.524 kb on - strand, within CA264_07055at 1626.524 kb on - strand, within CA264_07055at 1626.531 kb on - strand, within CA264_07055at 1626.573 kb on + strand, within CA264_07055at 1626.589 kb on - strand, within CA264_07055at 1626.592 kb on + strand, within CA264_07055at 1626.592 kb on + strand, within CA264_07055at 1626.592 kb on + strand, within CA264_07055at 1626.593 kb on - strand, within CA264_07055at 1626.593 kb on - strand, within CA264_07055at 1626.595 kb on + strand, within CA264_07055at 1626.603 kb on - strand, within CA264_07055at 1626.828 kb on - strand, within CA264_07055at 1626.915 kb on + strand, within CA264_07055at 1626.916 kb on - strand, within CA264_07055at 1626.916 kb on - strand, within CA264_07055at 1626.919 kb on + strand, within CA264_07055at 1626.926 kb on - strand, within CA264_07055at 1626.930 kb on + strand, within CA264_07055at 1626.931 kb on - strand, within CA264_07055at 1626.980 kb on - strand, within CA264_07055at 1626.980 kb on - strand, within CA264_07055at 1626.980 kb on - strand, within CA264_07055at 1626.982 kb on - strand, within CA264_07055at 1627.168 kb on + strandat 1627.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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1,624,747 - CA264_07045 0.75 -1.0
1,624,752 + CA264_07045 0.75 -0.1
1,624,752 + CA264_07045 0.75 +0.2
1,624,752 + CA264_07045 0.75 +0.3
1,624,752 + CA264_07045 0.75 +0.6
1,624,754 + CA264_07045 0.76 +0.6
1,624,754 + CA264_07045 0.76 +0.1
1,624,755 - CA264_07045 0.76 -0.6
1,624,800 + CA264_07045 0.84 +0.3
1,624,829 + CA264_07045 0.88 +0.3
1,625,007 + +1.0
1,625,008 - +0.1
1,625,008 - +0.8
1,625,075 + -0.0
1,625,088 + +0.6
1,625,088 + +0.2
1,625,089 - +0.5
1,625,089 - +0.7
1,625,089 - +0.8
1,625,155 + -0.6
1,625,167 + -1.0
1,625,205 + +0.0
1,625,206 - +0.8
1,625,206 - +2.6
1,625,208 - +0.8
1,625,218 - +2.0
1,625,221 + +0.8
1,625,222 - +0.8
1,625,268 + -0.2
1,625,268 + +0.3
1,625,269 - +1.0
1,625,269 - -0.3
1,625,269 - +0.7
1,625,361 - +0.2
1,625,391 - +0.7
1,625,437 - +0.3
1,625,464 + -1.3
1,625,487 + +0.8
1,625,574 + +1.1
1,625,574 + +1.4
1,625,574 + -0.0
1,625,644 + +0.5
1,625,653 + -0.6
1,625,654 - +0.2
1,625,662 + -0.0
1,625,663 - +1.0
1,625,700 + -0.2
1,625,817 + CA264_07050 0.30 +0.7
1,625,818 - +0.6
1,625,823 + CA264_07050 0.31 +1.2
1,625,823 + CA264_07050 0.31 +0.3
1,625,824 - CA264_07050 0.31 +1.0
1,625,824 - CA264_07050 0.31 +0.8
1,625,850 - CA264_07050 0.36 +0.8
1,625,850 - CA264_07050 0.36 +0.3
1,625,850 - CA264_07050 0.36 +1.3
1,625,867 + CA264_07050 0.39 +0.7
1,625,906 + CA264_07050 0.47 -0.1
1,625,907 - CA264_07050 0.47 +0.5
1,625,907 - CA264_07050 0.47 +1.0
1,625,907 - CA264_07050 0.47 -1.1
1,625,975 - CA264_07050 0.59 +0.4
1,625,991 - CA264_07050 0.62 +1.5
1,625,991 - CA264_07050 0.62 +0.5
1,626,023 + CA264_07050 0.68 -0.0
1,626,023 + CA264_07050 0.68 +0.0
1,626,024 - CA264_07050 0.69 +0.8
1,626,024 - CA264_07050 0.69 -0.1
1,626,024 - CA264_07050 0.69 +0.3
1,626,086 + CA264_07050 0.80 -0.1
1,626,086 + CA264_07050 0.80 +0.5
1,626,292 - +0.5
1,626,301 - +0.1
1,626,301 - +0.5
1,626,315 + -0.1
1,626,354 - +0.0
1,626,380 + -1.2
1,626,380 + +0.1
1,626,380 + +0.0
1,626,427 + CA264_07055 0.15 +1.8
1,626,429 + CA264_07055 0.16 -0.3
1,626,429 + CA264_07055 0.16 +0.4
1,626,429 + CA264_07055 0.16 -1.0
1,626,429 + CA264_07055 0.16 -0.1
1,626,429 + CA264_07055 0.16 -0.8
1,626,430 - CA264_07055 0.16 -0.8
1,626,430 - CA264_07055 0.16 +0.4
1,626,430 - CA264_07055 0.16 -0.4
1,626,450 + CA264_07055 0.18 +0.3
1,626,451 - CA264_07055 0.18 +0.2
1,626,484 + CA264_07055 0.22 +0.1
1,626,485 - CA264_07055 0.22 -0.8
1,626,486 + CA264_07055 0.22 -0.8
1,626,486 + CA264_07055 0.22 -0.6
1,626,487 - CA264_07055 0.22 +0.2
1,626,487 - CA264_07055 0.22 -0.5
1,626,487 - CA264_07055 0.22 +0.3
1,626,497 + CA264_07055 0.24 +0.9
1,626,498 - CA264_07055 0.24 +0.6
1,626,524 - CA264_07055 0.27 -0.1
1,626,524 - CA264_07055 0.27 -0.7
1,626,531 - CA264_07055 0.28 +1.4
1,626,573 + CA264_07055 0.33 +0.9
1,626,589 - CA264_07055 0.35 -0.1
1,626,592 + CA264_07055 0.35 -0.1
1,626,592 + CA264_07055 0.35 -0.0
1,626,592 + CA264_07055 0.35 +0.2
1,626,593 - CA264_07055 0.35 +0.6
1,626,593 - CA264_07055 0.35 +0.0
1,626,595 + CA264_07055 0.35 -1.3
1,626,603 - CA264_07055 0.36 -1.3
1,626,828 - CA264_07055 0.63 -0.1
1,626,915 + CA264_07055 0.74 +0.6
1,626,916 - CA264_07055 0.74 +0.6
1,626,916 - CA264_07055 0.74 -1.4
1,626,919 + CA264_07055 0.74 -0.3
1,626,926 - CA264_07055 0.75 +0.4
1,626,930 + CA264_07055 0.75 +0.5
1,626,931 - CA264_07055 0.76 +0.2
1,626,980 - CA264_07055 0.81 -0.6
1,626,980 - CA264_07055 0.81 +0.0
1,626,980 - CA264_07055 0.81 -0.9
1,626,982 - CA264_07055 0.82 +0.7
1,627,168 + +0.7
1,627,175 - +0.8

Or see this region's nucleotide sequence