Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04255

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04250 and CA264_04255 are separated by 16 nucleotidesCA264_04255 and CA264_04260 are separated by 238 nucleotides CA264_04250: CA264_04250 - NADH oxidoreductase (quinone) subunit F, at 982,438 to 983,739 _04250 CA264_04255: CA264_04255 - NADH-quinone oxidoreductase subunit E, at 983,756 to 984,220 _04255 CA264_04260: CA264_04260 - NADH-quinone oxidoreductase subunit C/D, at 984,459 to 986,207 _04260 Position (kb) 983 984 985Strain fitness (log2 ratio) -2 -1 0 1 2at 982.829 kb on + strand, within CA264_04250at 982.908 kb on - strand, within CA264_04250at 983.012 kb on + strand, within CA264_04250at 983.091 kb on + strand, within CA264_04250at 983.092 kb on - strand, within CA264_04250at 983.266 kb on - strand, within CA264_04250at 983.281 kb on + strand, within CA264_04250at 983.290 kb on - strand, within CA264_04250at 983.298 kb on - strand, within CA264_04250at 983.310 kb on - strand, within CA264_04250at 983.321 kb on - strand, within CA264_04250at 983.355 kb on - strand, within CA264_04250at 983.355 kb on - strand, within CA264_04250at 983.375 kb on + strand, within CA264_04250at 983.393 kb on - strand, within CA264_04250at 983.614 kb on + strandat 983.632 kb on - strandat 983.668 kb on + strandat 983.669 kb on - strandat 983.761 kb on + strandat 983.762 kb on - strandat 983.763 kb on + strandat 983.763 kb on + strandat 983.808 kb on + strand, within CA264_04255at 983.913 kb on - strand, within CA264_04255at 983.913 kb on - strand, within CA264_04255at 983.928 kb on + strand, within CA264_04255at 983.928 kb on + strand, within CA264_04255at 983.929 kb on - strand, within CA264_04255at 983.929 kb on - strand, within CA264_04255at 983.984 kb on + strand, within CA264_04255at 983.985 kb on - strand, within CA264_04255at 983.985 kb on - strand, within CA264_04255at 984.030 kb on + strand, within CA264_04255at 984.068 kb on - strand, within CA264_04255at 984.068 kb on - strand, within CA264_04255at 984.146 kb on + strand, within CA264_04255at 984.147 kb on - strand, within CA264_04255at 984.179 kb on + strandat 984.180 kb on - strandat 984.236 kb on - strandat 984.246 kb on + strandat 984.262 kb on + strandat 984.336 kb on - strandat 984.355 kb on + strandat 984.357 kb on + strandat 984.357 kb on + strandat 984.358 kb on - strandat 984.358 kb on - strandat 984.376 kb on + strandat 984.376 kb on + strandat 984.427 kb on + strandat 984.428 kb on - strandat 984.431 kb on - strandat 984.450 kb on + strandat 984.450 kb on + strandat 984.501 kb on + strandat 984.502 kb on - strandat 984.502 kb on - strandat 984.504 kb on - strandat 984.537 kb on + strandat 984.538 kb on - strandat 984.541 kb on + strandat 984.542 kb on - strandat 984.623 kb on - strandat 984.625 kb on + strandat 984.626 kb on - strandat 984.784 kb on + strand, within CA264_04260at 984.820 kb on - strand, within CA264_04260at 984.822 kb on + strand, within CA264_04260at 984.823 kb on - strand, within CA264_04260at 984.823 kb on - strand, within CA264_04260at 984.823 kb on - strand, within CA264_04260at 984.824 kb on + strand, within CA264_04260at 984.825 kb on - strand, within CA264_04260at 984.825 kb on - strand, within CA264_04260at 984.825 kb on - strand, within CA264_04260at 984.856 kb on - strand, within CA264_04260at 985.102 kb on + strand, within CA264_04260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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982,829 + CA264_04250 0.30 +0.1
982,908 - CA264_04250 0.36 +0.8
983,012 + CA264_04250 0.44 +0.1
983,091 + CA264_04250 0.50 -0.2
983,092 - CA264_04250 0.50 +0.4
983,266 - CA264_04250 0.64 -1.7
983,281 + CA264_04250 0.65 +1.3
983,290 - CA264_04250 0.65 -0.5
983,298 - CA264_04250 0.66 -0.2
983,310 - CA264_04250 0.67 +0.2
983,321 - CA264_04250 0.68 +0.2
983,355 - CA264_04250 0.70 +0.6
983,355 - CA264_04250 0.70 -0.8
983,375 + CA264_04250 0.72 -0.4
983,393 - CA264_04250 0.73 -0.1
983,614 + -1.4
983,632 - +0.7
983,668 + -0.4
983,669 - -0.2
983,761 + +0.1
983,762 - +0.5
983,763 + -0.3
983,763 + +0.4
983,808 + CA264_04255 0.11 -0.8
983,913 - CA264_04255 0.34 -0.4
983,913 - CA264_04255 0.34 +0.7
983,928 + CA264_04255 0.37 +0.2
983,928 + CA264_04255 0.37 -1.0
983,929 - CA264_04255 0.37 -1.7
983,929 - CA264_04255 0.37 -0.3
983,984 + CA264_04255 0.49 +0.3
983,985 - CA264_04255 0.49 -0.0
983,985 - CA264_04255 0.49 +0.0
984,030 + CA264_04255 0.59 -0.1
984,068 - CA264_04255 0.67 +0.6
984,068 - CA264_04255 0.67 +0.1
984,146 + CA264_04255 0.84 -2.0
984,147 - CA264_04255 0.84 -0.2
984,179 + -0.2
984,180 - +0.9
984,236 - -0.4
984,246 + +0.3
984,262 + -0.8
984,336 - +0.4
984,355 + -0.2
984,357 + +1.4
984,357 + +0.2
984,358 - -0.1
984,358 - -0.9
984,376 + -0.9
984,376 + -0.3
984,427 + -0.9
984,428 - -0.9
984,431 - +0.6
984,450 + -0.1
984,450 + -0.3
984,501 + +0.4
984,502 - -0.6
984,502 - -0.3
984,504 - +0.2
984,537 + +1.0
984,538 - -0.2
984,541 + -0.5
984,542 - -0.7
984,623 - +0.2
984,625 + +0.3
984,626 - +0.9
984,784 + CA264_04260 0.19 -0.0
984,820 - CA264_04260 0.21 -0.3
984,822 + CA264_04260 0.21 -0.1
984,823 - CA264_04260 0.21 -1.3
984,823 - CA264_04260 0.21 -1.9
984,823 - CA264_04260 0.21 +0.3
984,824 + CA264_04260 0.21 -0.4
984,825 - CA264_04260 0.21 +0.1
984,825 - CA264_04260 0.21 +0.2
984,825 - CA264_04260 0.21 -0.1
984,856 - CA264_04260 0.23 +1.8
985,102 + CA264_04260 0.37 +0.6

Or see this region's nucleotide sequence