Experiment: m.b. Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02625 and CA264_02630 are separated by 50 nucleotides CA264_02630 and CA264_02635 are separated by 69 nucleotides CA264_02635 and CA264_02640 are separated by 214 nucleotides
CA264_02625: CA264_02625 - hypothetical protein, at 607,759 to 609,330
_02625
CA264_02630: CA264_02630 - carbonic anhydrase, at 609,381 to 610,022
_02630
CA264_02635: CA264_02635 - hypothetical protein, at 610,092 to 610,700
_02635
CA264_02640: CA264_02640 - SWFGD domain-containing protein, at 610,915 to 611,886
_02640
Position (kb) 609
610
611 Strain fitness (log2 ratio) -1
0
1
2 at 608.431 kb on + strand, within CA264_02625 at 608.431 kb on + strand, within CA264_02625 at 608.432 kb on - strand, within CA264_02625 at 608.468 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.561 kb on + strand, within CA264_02625 at 608.561 kb on + strand, within CA264_02625 at 608.562 kb on - strand, within CA264_02625 at 608.568 kb on + strand, within CA264_02625 at 608.682 kb on - strand, within CA264_02625 at 608.685 kb on + strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.729 kb on + strand, within CA264_02625 at 608.729 kb on + strand, within CA264_02625 at 608.835 kb on - strand, within CA264_02625 at 608.911 kb on + strand, within CA264_02625 at 608.975 kb on + strand, within CA264_02625 at 609.049 kb on + strand, within CA264_02625 at 609.049 kb on + strand, within CA264_02625 at 609.050 kb on - strand, within CA264_02625 at 609.062 kb on - strand, within CA264_02625 at 609.067 kb on + strand, within CA264_02625 at 609.108 kb on + strand, within CA264_02625 at 609.152 kb on + strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.219 kb on - strand at 609.224 kb on - strand at 609.230 kb on + strand at 609.252 kb on + strand at 609.253 kb on - strand at 609.328 kb on + strand at 609.376 kb on + strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.379 kb on - strand at 609.379 kb on - strand at 609.379 kb on - strand at 609.619 kb on - strand, within CA264_02630 at 609.635 kb on + strand, within CA264_02630 at 609.635 kb on + strand, within CA264_02630 at 609.667 kb on - strand, within CA264_02630 at 609.740 kb on + strand, within CA264_02630 at 609.740 kb on + strand, within CA264_02630 at 609.864 kb on - strand, within CA264_02630 at 609.915 kb on + strand, within CA264_02630 at 609.915 kb on + strand, within CA264_02630 at 609.987 kb on + strand at 609.987 kb on + strand at 609.987 kb on + strand at 610.021 kb on - strand at 610.034 kb on - strand at 610.040 kb on - strand at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.268 kb on + strand, within CA264_02635 at 610.321 kb on - strand, within CA264_02635 at 610.423 kb on + strand, within CA264_02635 at 610.424 kb on - strand, within CA264_02635 at 610.549 kb on - strand, within CA264_02635 at 610.786 kb on - strand at 610.786 kb on - strand at 610.787 kb on + strand at 610.787 kb on + strand at 610.787 kb on + strand at 610.788 kb on - strand at 610.789 kb on + strand at 610.789 kb on + strand at 610.790 kb on - strand at 610.790 kb on - strand at 610.793 kb on + strand at 610.848 kb on + strand at 610.862 kb on + strand at 610.863 kb on - strand at 610.917 kb on - strand at 610.925 kb on + strand at 610.926 kb on - strand at 610.926 kb on - strand at 610.955 kb on + strand at 610.955 kb on + strand at 610.956 kb on - strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.971 kb on - strand at 610.971 kb on - strand at 610.971 kb on - strand at 610.986 kb on + strand at 610.986 kb on + strand at 611.001 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml remove 608,431 + CA264_02625 0.43 +0.4 608,431 + CA264_02625 0.43 -0.3 608,432 - CA264_02625 0.43 +0.1 608,468 + CA264_02625 0.45 -0.9 608,554 + CA264_02625 0.51 -0.3 608,554 + CA264_02625 0.51 +0.9 608,554 + CA264_02625 0.51 -0.1 608,561 + CA264_02625 0.51 +0.2 608,561 + CA264_02625 0.51 +1.8 608,562 - CA264_02625 0.51 +0.5 608,568 + CA264_02625 0.51 +0.4 608,682 - CA264_02625 0.59 -0.5 608,685 + CA264_02625 0.59 -0.6 608,686 - CA264_02625 0.59 -0.4 608,686 - CA264_02625 0.59 +0.6 608,686 - CA264_02625 0.59 +0.7 608,729 + CA264_02625 0.62 -0.7 608,729 + CA264_02625 0.62 +1.3 608,835 - CA264_02625 0.68 -0.1 608,911 + CA264_02625 0.73 +0.4 608,975 + CA264_02625 0.77 +0.3 609,049 + CA264_02625 0.82 -0.2 609,049 + CA264_02625 0.82 +0.3 609,050 - CA264_02625 0.82 +0.3 609,062 - CA264_02625 0.83 -0.1 609,067 + CA264_02625 0.83 -0.1 609,108 + CA264_02625 0.86 -0.5 609,152 + CA264_02625 0.89 +0.4 609,153 - CA264_02625 0.89 -0.1 609,153 - CA264_02625 0.89 +1.5 609,153 - CA264_02625 0.89 -0.8 609,153 - CA264_02625 0.89 +0.2 609,219 - -0.2 609,224 - +0.1 609,230 + -0.2 609,252 + -0.7 609,253 - +1.2 609,328 + +0.7 609,376 + -0.2 609,377 - +0.2 609,377 - -0.4 609,377 - +0.8 609,379 - -0.1 609,379 - -0.1 609,379 - +0.5 609,619 - CA264_02630 0.37 +0.0 609,635 + CA264_02630 0.40 -0.1 609,635 + CA264_02630 0.40 -0.3 609,667 - CA264_02630 0.45 -0.7 609,740 + CA264_02630 0.56 +1.0 609,740 + CA264_02630 0.56 +1.0 609,864 - CA264_02630 0.75 +0.4 609,915 + CA264_02630 0.83 +2.3 609,915 + CA264_02630 0.83 +0.4 609,987 + +0.1 609,987 + -0.4 609,987 + -0.3 610,021 - -0.1 610,034 - -0.1 610,040 - +0.7 610,173 + CA264_02635 0.13 -1.3 610,173 + CA264_02635 0.13 -0.7 610,173 + CA264_02635 0.13 -0.3 610,173 + CA264_02635 0.13 -0.9 610,173 + CA264_02635 0.13 -0.4 610,268 + CA264_02635 0.29 +0.3 610,321 - CA264_02635 0.38 +0.3 610,423 + CA264_02635 0.54 -0.3 610,424 - CA264_02635 0.55 +0.0 610,549 - CA264_02635 0.75 -0.2 610,786 - +0.7 610,786 - +0.5 610,787 + +0.7 610,787 + -0.3 610,787 + -0.1 610,788 - +1.3 610,789 + -0.2 610,789 + +0.7 610,790 - +0.4 610,790 - -0.1 610,793 + +0.7 610,848 + -0.7 610,862 + +0.2 610,863 - -0.2 610,917 - +0.5 610,925 + +0.1 610,926 - -1.2 610,926 - -0.5 610,955 + +0.6 610,955 + +0.4 610,956 - +0.1 610,970 + +0.4 610,970 + +0.4 610,970 + +0.0 610,970 + +0.4 610,970 + +0.6 610,970 + -0.3 610,971 - +0.0 610,971 - -1.0 610,971 - +2.1 610,986 + -0.2 610,986 + +0.1 611,001 - +0.6
Or see this region's nucleotide sequence