Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02020

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02015 and CA264_02020 are separated by 144 nucleotidesCA264_02020 and CA264_02025 are separated by 302 nucleotidesCA264_02025 and CA264_02030 are separated by 22 nucleotides CA264_02015: CA264_02015 - thiamine-phosphate kinase, at 463,647 to 464,672 _02015 CA264_02020: CA264_02020 - histidinol-phosphate transaminase, at 464,817 to 466,964 _02020 CA264_02025: CA264_02025 - nitroreductase, at 467,267 to 467,851 _02025 CA264_02030: CA264_02030 - hypothetical protein, at 467,874 to 468,587 _02030 Position (kb) 464 465 466 467Strain fitness (log2 ratio) -2 -1 0 1at 464.672 kb on + strandat 464.676 kb on + strandat 464.677 kb on - strandat 464.677 kb on - strandat 464.793 kb on + strandat 464.819 kb on - strandat 464.819 kb on - strandat 464.925 kb on + strandat 464.925 kb on + strandat 465.082 kb on - strand, within CA264_02020at 465.140 kb on - strand, within CA264_02020at 465.140 kb on - strand, within CA264_02020at 465.366 kb on + strand, within CA264_02020at 465.366 kb on + strand, within CA264_02020at 465.367 kb on - strand, within CA264_02020at 465.398 kb on - strand, within CA264_02020at 465.435 kb on + strand, within CA264_02020at 465.436 kb on - strand, within CA264_02020at 465.436 kb on - strand, within CA264_02020at 465.436 kb on - strand, within CA264_02020at 465.510 kb on - strand, within CA264_02020at 465.592 kb on - strand, within CA264_02020at 465.600 kb on + strand, within CA264_02020at 465.734 kb on - strand, within CA264_02020at 465.793 kb on + strand, within CA264_02020at 465.960 kb on + strand, within CA264_02020at 465.960 kb on + strand, within CA264_02020at 465.963 kb on - strand, within CA264_02020at 466.097 kb on + strand, within CA264_02020at 466.161 kb on + strand, within CA264_02020at 466.161 kb on + strand, within CA264_02020at 466.293 kb on + strand, within CA264_02020at 466.328 kb on - strand, within CA264_02020at 466.354 kb on + strand, within CA264_02020at 466.380 kb on + strand, within CA264_02020at 466.380 kb on + strand, within CA264_02020at 466.406 kb on - strand, within CA264_02020at 466.450 kb on + strand, within CA264_02020at 466.450 kb on + strand, within CA264_02020at 466.471 kb on - strand, within CA264_02020at 466.516 kb on + strand, within CA264_02020at 466.525 kb on + strand, within CA264_02020at 466.526 kb on - strand, within CA264_02020at 466.616 kb on - strand, within CA264_02020at 466.675 kb on + strand, within CA264_02020at 466.852 kb on + strandat 466.869 kb on + strandat 466.915 kb on - strandat 466.987 kb on + strandat 466.994 kb on + strandat 467.024 kb on + strandat 467.025 kb on - strandat 467.025 kb on - strandat 467.027 kb on + strandat 467.027 kb on + strandat 467.028 kb on - strandat 467.028 kb on - strandat 467.033 kb on + strandat 467.034 kb on - strandat 467.034 kb on - strandat 467.034 kb on - strandat 467.038 kb on - strandat 467.038 kb on - strandat 467.043 kb on + strandat 467.043 kb on + strandat 467.044 kb on - strandat 467.047 kb on + strandat 467.047 kb on + strandat 467.207 kb on + strandat 467.242 kb on - strandat 467.288 kb on - strandat 467.432 kb on - strand, within CA264_02025at 467.435 kb on + strand, within CA264_02025at 467.436 kb on - strand, within CA264_02025at 467.476 kb on + strand, within CA264_02025at 467.476 kb on + strand, within CA264_02025at 467.549 kb on + strand, within CA264_02025at 467.550 kb on - strand, within CA264_02025at 467.613 kb on + strand, within CA264_02025at 467.647 kb on - strand, within CA264_02025at 467.739 kb on - strand, within CA264_02025at 467.849 kb on + strandat 467.849 kb on + strandat 467.852 kb on + strandat 467.853 kb on - strandat 467.853 kb on - strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.874 kb on - strandat 467.874 kb on - strandat 467.887 kb on + strandat 467.888 kb on - strandat 467.894 kb on + strandat 467.895 kb on - strandat 467.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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464,672 + +0.9
464,676 + +0.8
464,677 - +1.3
464,677 - -1.4
464,793 + -0.6
464,819 - +0.3
464,819 - +0.3
464,925 + -0.2
464,925 + -1.7
465,082 - CA264_02020 0.12 -0.3
465,140 - CA264_02020 0.15 -0.8
465,140 - CA264_02020 0.15 -0.5
465,366 + CA264_02020 0.26 +0.0
465,366 + CA264_02020 0.26 +0.3
465,367 - CA264_02020 0.26 +0.2
465,398 - CA264_02020 0.27 -0.0
465,435 + CA264_02020 0.29 +0.1
465,436 - CA264_02020 0.29 +0.1
465,436 - CA264_02020 0.29 -0.3
465,436 - CA264_02020 0.29 +0.1
465,510 - CA264_02020 0.32 -0.7
465,592 - CA264_02020 0.36 -2.4
465,600 + CA264_02020 0.36 -0.5
465,734 - CA264_02020 0.43 -0.3
465,793 + CA264_02020 0.45 -0.9
465,960 + CA264_02020 0.53 +0.2
465,960 + CA264_02020 0.53 -0.8
465,963 - CA264_02020 0.53 -0.3
466,097 + CA264_02020 0.60 -0.2
466,161 + CA264_02020 0.63 -0.6
466,161 + CA264_02020 0.63 -0.3
466,293 + CA264_02020 0.69 -0.9
466,328 - CA264_02020 0.70 +0.8
466,354 + CA264_02020 0.72 +0.1
466,380 + CA264_02020 0.73 +0.5
466,380 + CA264_02020 0.73 -0.5
466,406 - CA264_02020 0.74 -0.8
466,450 + CA264_02020 0.76 -0.4
466,450 + CA264_02020 0.76 -0.5
466,471 - CA264_02020 0.77 -0.7
466,516 + CA264_02020 0.79 -0.2
466,525 + CA264_02020 0.80 +0.1
466,526 - CA264_02020 0.80 -0.4
466,616 - CA264_02020 0.84 +0.1
466,675 + CA264_02020 0.86 -0.8
466,852 + +0.1
466,869 + -0.8
466,915 - -0.8
466,987 + +0.6
466,994 + -0.5
467,024 + -0.4
467,025 - -1.9
467,025 - -0.2
467,027 + -0.8
467,027 + -0.3
467,028 - -0.1
467,028 - +0.0
467,033 + -0.5
467,034 - +1.1
467,034 - -0.5
467,034 - -0.3
467,038 - -0.1
467,038 - +0.7
467,043 + -0.9
467,043 + +0.6
467,044 - -0.8
467,047 + -0.3
467,047 + -1.4
467,207 + -0.7
467,242 - +0.3
467,288 - -0.6
467,432 - CA264_02025 0.28 -0.8
467,435 + CA264_02025 0.29 +0.5
467,436 - CA264_02025 0.29 -0.1
467,476 + CA264_02025 0.36 -0.7
467,476 + CA264_02025 0.36 +1.1
467,549 + CA264_02025 0.48 -0.7
467,550 - CA264_02025 0.48 -0.2
467,613 + CA264_02025 0.59 -0.7
467,647 - CA264_02025 0.65 -0.5
467,739 - CA264_02025 0.81 +0.3
467,849 + -1.5
467,849 + -0.7
467,852 + +0.0
467,853 - -0.3
467,853 - -0.4
467,873 + -0.4
467,873 + -0.7
467,873 + -0.3
467,873 + +0.1
467,873 + -0.4
467,873 + -0.4
467,873 + -1.9
467,873 + -0.3
467,873 + -0.4
467,874 - +1.1
467,874 - +0.0
467,887 + +0.1
467,888 - -2.0
467,894 + -0.7
467,895 - +0.5
467,945 + -0.7

Or see this region's nucleotide sequence