Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01865

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01860 and CA264_01865 are separated by 385 nucleotidesCA264_01865 and CA264_01870 are separated by 104 nucleotides CA264_01860: CA264_01860 - hypothetical protein, at 434,398 to 435,303 _01860 CA264_01865: CA264_01865 - polyisoprenoid-binding protein, at 435,689 to 436,225 _01865 CA264_01870: CA264_01870 - hypothetical protein, at 436,330 to 437,229 _01870 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2at 434.867 kb on + strand, within CA264_01860at 434.872 kb on + strand, within CA264_01860at 434.872 kb on + strand, within CA264_01860at 434.873 kb on - strand, within CA264_01860at 434.873 kb on - strand, within CA264_01860at 434.873 kb on - strand, within CA264_01860at 434.948 kb on + strand, within CA264_01860at 434.970 kb on - strand, within CA264_01860at 435.029 kb on - strand, within CA264_01860at 435.058 kb on + strand, within CA264_01860at 435.073 kb on + strand, within CA264_01860at 435.117 kb on + strand, within CA264_01860at 435.127 kb on + strand, within CA264_01860at 435.127 kb on + strand, within CA264_01860at 435.127 kb on + strand, within CA264_01860at 435.128 kb on - strand, within CA264_01860at 435.129 kb on + strand, within CA264_01860at 435.144 kb on + strand, within CA264_01860at 435.153 kb on + strand, within CA264_01860at 435.185 kb on + strand, within CA264_01860at 435.186 kb on - strand, within CA264_01860at 435.251 kb on + strandat 435.257 kb on - strandat 435.272 kb on + strandat 435.326 kb on - strandat 435.368 kb on + strandat 435.373 kb on + strandat 435.439 kb on - strandat 435.494 kb on - strandat 435.494 kb on - strandat 435.505 kb on + strandat 435.506 kb on - strandat 435.529 kb on - strandat 435.532 kb on - strandat 435.584 kb on + strandat 435.626 kb on + strandat 435.688 kb on + strandat 435.688 kb on + strandat 435.689 kb on - strandat 435.732 kb on + strandat 435.739 kb on + strandat 435.740 kb on - strandat 435.777 kb on - strand, within CA264_01865at 435.788 kb on + strand, within CA264_01865at 435.791 kb on - strand, within CA264_01865at 436.120 kb on + strand, within CA264_01865at 436.239 kb on + strandat 436.239 kb on + strandat 436.239 kb on + strandat 436.240 kb on - strandat 436.240 kb on - strandat 436.245 kb on + strandat 436.245 kb on + strandat 436.245 kb on + strandat 436.246 kb on - strandat 436.255 kb on + strandat 436.280 kb on - strandat 436.341 kb on - strandat 436.391 kb on + strandat 436.391 kb on + strandat 436.391 kb on + strandat 436.392 kb on - strandat 436.481 kb on + strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.495 kb on - strand, within CA264_01870at 436.519 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.639 kb on + strand, within CA264_01870at 436.649 kb on + strand, within CA264_01870at 436.650 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.847 kb on - strand, within CA264_01870at 436.876 kb on + strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.878 kb on + strand, within CA264_01870at 436.879 kb on - strand, within CA264_01870at 436.882 kb on - strand, within CA264_01870at 436.924 kb on + strand, within CA264_01870at 436.925 kb on - strandat 436.925 kb on - strand, within CA264_01870at 437.139 kb on - strand, within CA264_01870

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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434,867 + CA264_01860 0.52 +0.5
434,872 + CA264_01860 0.52 +0.6
434,872 + CA264_01860 0.52 -0.5
434,873 - CA264_01860 0.52 +0.8
434,873 - CA264_01860 0.52 +0.1
434,873 - CA264_01860 0.52 -0.5
434,948 + CA264_01860 0.61 +0.6
434,970 - CA264_01860 0.63 -0.4
435,029 - CA264_01860 0.70 -0.4
435,058 + CA264_01860 0.73 -1.0
435,073 + CA264_01860 0.75 -0.1
435,117 + CA264_01860 0.79 -1.9
435,127 + CA264_01860 0.80 -0.2
435,127 + CA264_01860 0.80 +0.7
435,127 + CA264_01860 0.80 -0.1
435,128 - CA264_01860 0.81 +0.2
435,129 + CA264_01860 0.81 -0.1
435,144 + CA264_01860 0.82 +0.5
435,153 + CA264_01860 0.83 -0.6
435,185 + CA264_01860 0.87 -0.0
435,186 - CA264_01860 0.87 +0.0
435,251 + +0.4
435,257 - +0.4
435,272 + +0.7
435,326 - -0.4
435,368 + -1.1
435,373 + +0.3
435,439 - -0.1
435,494 - +0.3
435,494 - +0.1
435,505 + -0.6
435,506 - -0.6
435,529 - +0.4
435,532 - -0.3
435,584 + +0.1
435,626 + -0.4
435,688 + +0.2
435,688 + +2.2
435,689 - -0.6
435,732 + -0.6
435,739 + +0.1
435,740 - -0.2
435,777 - CA264_01865 0.16 +0.2
435,788 + CA264_01865 0.18 +1.3
435,791 - CA264_01865 0.19 +0.4
436,120 + CA264_01865 0.80 +1.1
436,239 + +0.4
436,239 + +0.2
436,239 + +2.6
436,240 - -1.2
436,240 - +0.4
436,245 + +0.7
436,245 + +0.4
436,245 + -0.2
436,246 - +0.5
436,255 + -0.5
436,280 - +0.1
436,341 - -0.4
436,391 + -0.5
436,391 + -0.9
436,391 + -0.0
436,392 - -0.2
436,481 + CA264_01870 0.17 +0.6
436,482 - CA264_01870 0.17 +0.0
436,482 - CA264_01870 0.17 -0.0
436,482 - CA264_01870 0.17 +0.1
436,495 - CA264_01870 0.18 +0.3
436,519 - CA264_01870 0.21 -0.1
436,635 - CA264_01870 0.34 +0.2
436,635 - CA264_01870 0.34 -0.4
436,635 - CA264_01870 0.34 -0.6
436,639 + CA264_01870 0.34 -1.0
436,649 + CA264_01870 0.35 -0.8
436,650 - CA264_01870 0.36 +0.2
436,664 - CA264_01870 0.37 +0.5
436,664 - CA264_01870 0.37 -0.7
436,664 - CA264_01870 0.37 -0.8
436,664 - CA264_01870 0.37 -0.3
436,847 - CA264_01870 0.57 -0.2
436,876 + CA264_01870 0.61 -0.6
436,877 - CA264_01870 0.61 +0.6
436,877 - CA264_01870 0.61 -0.7
436,877 - CA264_01870 0.61 -0.0
436,878 + CA264_01870 0.61 -0.7
436,879 - CA264_01870 0.61 +0.5
436,882 - CA264_01870 0.61 +0.1
436,924 + CA264_01870 0.66 -1.2
436,925 - +2.6
436,925 - CA264_01870 0.66 +0.1
437,139 - CA264_01870 0.90 +0.5

Or see this region's nucleotide sequence