Strain Fitness in Pseudomonas simiae WCS417 around PS417_03350

Experiment: Chloramphenicol 0.015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_03345 and PS417_03350 are separated by 18 nucleotidesPS417_03350 and PS417_03355 are separated by 18 nucleotides PS417_03345: PS417_03345 - type I secretion protein TolC, at 767,314 to 768,534 _03345 PS417_03350: PS417_03350 - cytochrome C peroxidase, at 768,553 to 769,659 _03350 PS417_03355: PS417_03355 - cation transporter, at 769,678 to 772,815 _03355 Position (kb) 768 769 770Strain fitness (log2 ratio) -1 0 1 2at 767.695 kb on + strand, within PS417_03345at 767.695 kb on + strand, within PS417_03345at 767.696 kb on - strand, within PS417_03345at 767.696 kb on - strand, within PS417_03345at 767.696 kb on - strand, within PS417_03345at 767.696 kb on - strand, within PS417_03345at 767.696 kb on - strand, within PS417_03345at 768.088 kb on - strand, within PS417_03345at 768.122 kb on - strand, within PS417_03345at 768.326 kb on + strand, within PS417_03345at 768.458 kb on - strandat 768.512 kb on - strandat 768.552 kb on + strandat 768.757 kb on - strand, within PS417_03350at 768.979 kb on + strand, within PS417_03350at 768.980 kb on - strand, within PS417_03350at 769.493 kb on + strand, within PS417_03350at 769.493 kb on + strand, within PS417_03350at 769.494 kb on - strand, within PS417_03350at 769.552 kb on + strandat 770.100 kb on - strand, within PS417_03355at 770.150 kb on - strand, within PS417_03355at 770.150 kb on - strand, within PS417_03355at 770.293 kb on + strand, within PS417_03355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml
remove
767,695 + PS417_03345 0.31 -0.2
767,695 + PS417_03345 0.31 -0.1
767,696 - PS417_03345 0.31 -1.0
767,696 - PS417_03345 0.31 +0.3
767,696 - PS417_03345 0.31 +1.1
767,696 - PS417_03345 0.31 +1.1
767,696 - PS417_03345 0.31 -0.6
768,088 - PS417_03345 0.63 -0.7
768,122 - PS417_03345 0.66 -1.1
768,326 + PS417_03345 0.83 -0.1
768,458 - +0.4
768,512 - +0.1
768,552 + +0.6
768,757 - PS417_03350 0.18 +0.5
768,979 + PS417_03350 0.38 +0.7
768,980 - PS417_03350 0.39 -0.1
769,493 + PS417_03350 0.85 +0.2
769,493 + PS417_03350 0.85 +1.1
769,494 - PS417_03350 0.85 +1.9
769,552 + +0.6
770,100 - PS417_03355 0.13 +0.4
770,150 - PS417_03355 0.15 -1.0
770,150 - PS417_03355 0.15 -0.7
770,293 + PS417_03355 0.20 +0.4

Or see this region's nucleotide sequence