Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25690 and PS417_25695 are separated by 61 nucleotides PS417_25695 and PS417_25700 are separated by 247 nucleotides PS417_25700 and PS417_25705 overlap by 4 nucleotides PS417_25705 and PS417_25710 are separated by 161 nucleotides
PS417_25690: PS417_25690 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,547,865 to 5,548,512
_25690
PS417_25695: PS417_25695 - peroxiredoxin, at 5,548,574 to 5,548,996
_25695
PS417_25700: PS417_25700 - cyclic AMP receptor protein, at 5,549,244 to 5,549,888
_25700
PS417_25705: PS417_25705 - lipoate--protein ligase, at 5,549,885 to 5,550,580
_25705
PS417_25710: PS417_25710 - indole-3-glycerol-phosphate synthase, at 5,550,742 to 5,551,578
_25710
Position (kb)
5549
5550 Strain fitness (log2 ratio)
-1
0
1 at 5548.597 kb on - strand at 5548.651 kb on - strand, within PS417_25695 at 5548.651 kb on - strand, within PS417_25695 at 5548.742 kb on + strand, within PS417_25695 at 5548.743 kb on - strand, within PS417_25695 at 5548.743 kb on - strand, within PS417_25695 at 5549.034 kb on - strand at 5549.199 kb on + strand at 5549.215 kb on - strand at 5549.215 kb on - strand at 5549.237 kb on + strand at 5549.237 kb on + strand at 5549.237 kb on + strand at 5549.553 kb on + strand, within PS417_25700 at 5549.554 kb on - strand, within PS417_25700 at 5549.554 kb on - strand, within PS417_25700 at 5549.598 kb on + strand, within PS417_25700 at 5549.926 kb on + strand at 5550.092 kb on + strand, within PS417_25705 at 5550.251 kb on + strand, within PS417_25705 at 5550.310 kb on - strand, within PS417_25705 at 5550.589 kb on + strand at 5550.589 kb on + strand at 5550.589 kb on + strand at 5550.590 kb on - strand at 5550.590 kb on - strand at 5550.590 kb on - strand at 5550.593 kb on + strand at 5550.602 kb on - strand at 5550.673 kb on + strand at 5550.674 kb on - strand at 5550.674 kb on - strand at 5550.702 kb on + strand at 5550.709 kb on - strand at 5550.715 kb on + strand at 5550.716 kb on - strand at 5550.738 kb on + strand at 5550.748 kb on + strand at 5550.854 kb on + strand, within PS417_25710 at 5550.854 kb on + strand, within PS417_25710
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 5,548,597 - -0.2 5,548,651 - PS417_25695 0.18 -0.1 5,548,651 - PS417_25695 0.18 +0.6 5,548,742 + PS417_25695 0.40 +0.1 5,548,743 - PS417_25695 0.40 +0.4 5,548,743 - PS417_25695 0.40 +0.2 5,549,034 - -0.4 5,549,199 + -0.0 5,549,215 - -0.7 5,549,215 - -0.4 5,549,237 + +0.4 5,549,237 + -1.0 5,549,237 + +0.1 5,549,553 + PS417_25700 0.48 -0.6 5,549,554 - PS417_25700 0.48 -0.5 5,549,554 - PS417_25700 0.48 -1.4 5,549,598 + PS417_25700 0.55 -0.2 5,549,926 + +0.6 5,550,092 + PS417_25705 0.30 +0.1 5,550,251 + PS417_25705 0.53 -0.1 5,550,310 - PS417_25705 0.61 -0.2 5,550,589 + +0.2 5,550,589 + +0.8 5,550,589 + +0.5 5,550,590 - +0.9 5,550,590 - -0.4 5,550,590 - -0.5 5,550,593 + -0.5 5,550,602 - -0.6 5,550,673 + -0.5 5,550,674 - -0.1 5,550,674 - -0.2 5,550,702 + -0.8 5,550,709 - -0.2 5,550,715 + -0.3 5,550,716 - -0.3 5,550,738 + +0.2 5,550,748 + +0.4 5,550,854 + PS417_25710 0.13 +0.4 5,550,854 + PS417_25710 0.13 -0.6
Or see this region's nucleotide sequence