Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24670 and PS417_24675 are separated by 228 nucleotides PS417_24675 and PS417_24680 are separated by 61 nucleotides
PS417_24670: PS417_24670 - DNA polymerase III subunit delta, at 5,353,644 to 5,354,681
_24670
PS417_24675: PS417_24675 - lipoyl synthase, at 5,354,910 to 5,355,074
_24675
PS417_24680: PS417_24680 - murein transglycosylase, at 5,355,136 to 5,356,461
_24680
Position (kb)
5354
5355
5356 Strain fitness (log2 ratio)
-2
-1
0
1 at 5354.808 kb on - strand at 5354.818 kb on - strand at 5354.829 kb on + strand at 5354.829 kb on + strand at 5354.829 kb on + strand at 5354.830 kb on - strand at 5354.830 kb on - strand at 5354.830 kb on - strand at 5354.830 kb on - strand at 5354.830 kb on - strand at 5355.039 kb on - strand, within PS417_24675 at 5355.041 kb on + strand, within PS417_24675 at 5355.042 kb on - strand, within PS417_24675 at 5355.042 kb on - strand, within PS417_24675 at 5355.058 kb on - strand at 5355.058 kb on - strand at 5355.098 kb on + strand at 5355.098 kb on + strand at 5355.098 kb on + strand at 5355.099 kb on - strand at 5355.099 kb on - strand at 5355.099 kb on - strand at 5355.119 kb on - strand at 5355.119 kb on - strand at 5355.491 kb on - strand, within PS417_24680 at 5355.491 kb on - strand, within PS417_24680 at 5355.521 kb on + strand, within PS417_24680 at 5355.522 kb on - strand, within PS417_24680 at 5355.522 kb on - strand, within PS417_24680 at 5355.526 kb on - strand, within PS417_24680 at 5355.550 kb on + strand, within PS417_24680 at 5355.654 kb on + strand, within PS417_24680 at 5355.655 kb on - strand, within PS417_24680 at 5355.688 kb on + strand, within PS417_24680 at 5355.689 kb on - strand, within PS417_24680 at 5355.829 kb on + strand, within PS417_24680 at 5355.829 kb on + strand, within PS417_24680 at 5355.829 kb on + strand, within PS417_24680 at 5355.829 kb on + strand, within PS417_24680 at 5355.830 kb on - strand, within PS417_24680 at 5355.830 kb on - strand, within PS417_24680 at 5355.830 kb on - strand, within PS417_24680 at 5355.830 kb on - strand, within PS417_24680 at 5355.830 kb on - strand, within PS417_24680
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 5,354,808 - +0.5 5,354,818 - -0.1 5,354,829 + -0.3 5,354,829 + -0.2 5,354,829 + -0.2 5,354,830 - -0.2 5,354,830 - -0.4 5,354,830 - +0.2 5,354,830 - -1.9 5,354,830 - -0.2 5,355,039 - PS417_24675 0.78 -0.4 5,355,041 + PS417_24675 0.79 -1.6 5,355,042 - PS417_24675 0.80 -0.1 5,355,042 - PS417_24675 0.80 -0.7 5,355,058 - -0.4 5,355,058 - -0.2 5,355,098 + -0.4 5,355,098 + +0.3 5,355,098 + +0.4 5,355,099 - +0.6 5,355,099 - -0.2 5,355,099 - +0.4 5,355,119 - -0.6 5,355,119 - -1.2 5,355,491 - PS417_24680 0.27 +0.4 5,355,491 - PS417_24680 0.27 -0.0 5,355,521 + PS417_24680 0.29 -0.1 5,355,522 - PS417_24680 0.29 -0.4 5,355,522 - PS417_24680 0.29 +0.2 5,355,526 - PS417_24680 0.29 +0.4 5,355,550 + PS417_24680 0.31 +0.1 5,355,654 + PS417_24680 0.39 -0.2 5,355,655 - PS417_24680 0.39 +0.2 5,355,688 + PS417_24680 0.42 -0.4 5,355,689 - PS417_24680 0.42 -1.3 5,355,829 + PS417_24680 0.52 -0.0 5,355,829 + PS417_24680 0.52 -0.1 5,355,829 + PS417_24680 0.52 +0.1 5,355,829 + PS417_24680 0.52 +0.1 5,355,830 - PS417_24680 0.52 +0.7 5,355,830 - PS417_24680 0.52 +0.2 5,355,830 - PS417_24680 0.52 -1.0 5,355,830 - PS417_24680 0.52 +0.3 5,355,830 - PS417_24680 0.52 +0.1
Or see this region's nucleotide sequence