Strain Fitness in Pseudomonas simiae WCS417 around PS417_23755
Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.015 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 5,134,592 | + | -0.2 | |||
| 5,134,616 | + | -0.2 | |||
| 5,134,680 | - | +0.8 | |||
| 5,134,720 | + | +0.3 | |||
| 5,134,723 | - | -0.0 | |||
| 5,134,793 | - | +0.4 | |||
| 5,134,835 | - | -2.9 | |||
| 5,134,835 | - | -1.1 | |||
| 5,134,835 | - | +0.3 | |||
| 5,135,003 | + | -0.1 | |||
| 5,135,057 | + | -1.2 | |||
| 5,135,058 | - | +1.8 | |||
| 5,135,062 | - | -2.1 | |||
| 5,135,233 | - | +0.1 | |||
| 5,135,251 | + | +0.5 | |||
| 5,135,386 | + | +0.8 | |||
| 5,135,387 | - | +0.3 | |||
| 5,135,505 | + | +0.5 | |||
| 5,135,566 | + | +0.1 | |||
| 5,135,771 | + | PS417_23755 | 0.37 | +0.5 | |
| 5,135,772 | - | PS417_23755 | 0.37 | +0.3 | |
| 5,135,772 | - | PS417_23755 | 0.37 | +0.9 | |
| 5,136,168 | + | +0.3 | |||
| 5,136,168 | + | +0.3 | |||
| 5,136,168 | + | -0.5 | |||
| 5,136,257 | + | PS417_23760 | 0.14 | +0.8 | |
| 5,136,258 | - | PS417_23760 | 0.14 | +0.5 | |
| 5,136,508 | - | PS417_23760 | 0.33 | -0.3 | |
| 5,136,994 | + | PS417_23760 | 0.72 | +1.8 |
Or see this region's nucleotide sequence