Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23675 and PS417_23680 are separated by 133 nucleotides PS417_23680 and PS417_23685 are separated by 312 nucleotides
PS417_23675: PS417_23675 - transcriptional regulator, at 5,119,102 to 5,119,977
_23675
PS417_23680: PS417_23680 - AraC family transcriptional regulator, at 5,120,111 to 5,121,091
_23680
PS417_23685: PS417_23685 - anthranilate 1,2-dioxygenase (deaminating, decarboxylating) large subunit [EC: 1.14.12.1] <small>(from data)</small>, at 5,121,404 to 5,122,795
_23685
Position (kb) 5120
5121
5122 Strain fitness (log2 ratio) -1
0
1 at 5119.292 kb on - strand, within PS417_23675 at 5119.405 kb on + strand, within PS417_23675 at 5119.406 kb on - strand, within PS417_23675 at 5119.406 kb on - strand, within PS417_23675 at 5119.678 kb on + strand, within PS417_23675 at 5119.703 kb on - strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5120.034 kb on + strand at 5120.035 kb on - strand at 5120.035 kb on - strand at 5120.048 kb on + strand at 5120.063 kb on - strand at 5120.117 kb on - strand at 5120.117 kb on - strand at 5120.298 kb on + strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.439 kb on + strand, within PS417_23680 at 5120.440 kb on - strand, within PS417_23680 at 5120.559 kb on + strand, within PS417_23680 at 5120.560 kb on - strand, within PS417_23680 at 5120.560 kb on - strand at 5120.595 kb on + strand, within PS417_23680 at 5120.595 kb on + strand, within PS417_23680 at 5120.875 kb on - strand, within PS417_23680 at 5121.160 kb on + strand at 5121.161 kb on - strand at 5121.210 kb on + strand at 5121.363 kb on + strand at 5121.443 kb on - strand at 5121.563 kb on + strand, within PS417_23685 at 5121.564 kb on - strand, within PS417_23685 at 5121.764 kb on + strand, within PS417_23685 at 5121.764 kb on + strand, within PS417_23685 at 5121.764 kb on + strand, within PS417_23685 at 5121.764 kb on + strand, within PS417_23685 at 5121.765 kb on - strand, within PS417_23685 at 5121.866 kb on + strand, within PS417_23685 at 5121.866 kb on + strand, within PS417_23685 at 5121.866 kb on + strand, within PS417_23685 at 5121.867 kb on - strand, within PS417_23685 at 5121.867 kb on - strand, within PS417_23685 at 5122.010 kb on + strand, within PS417_23685 at 5122.010 kb on + strand, within PS417_23685 at 5122.017 kb on - strand, within PS417_23685 at 5122.036 kb on - strand, within PS417_23685 at 5122.082 kb on + strand, within PS417_23685 at 5122.088 kb on + strand, within PS417_23685 at 5122.088 kb on + strand, within PS417_23685 at 5122.089 kb on - strand at 5122.089 kb on - strand, within PS417_23685
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 5,119,292 - PS417_23675 0.22 -0.1 5,119,405 + PS417_23675 0.35 +0.1 5,119,406 - PS417_23675 0.35 -0.0 5,119,406 - PS417_23675 0.35 +0.2 5,119,678 + PS417_23675 0.66 -0.2 5,119,703 - PS417_23675 0.69 -0.3 5,119,715 + PS417_23675 0.70 +0.6 5,119,715 + PS417_23675 0.70 +0.6 5,119,715 + PS417_23675 0.70 -0.2 5,119,715 + PS417_23675 0.70 +0.5 5,120,034 + +0.0 5,120,035 - +0.7 5,120,035 - -0.2 5,120,048 + -0.1 5,120,063 - +0.3 5,120,117 - -0.1 5,120,117 - -0.0 5,120,298 + PS417_23680 0.19 +0.8 5,120,419 - PS417_23680 0.31 +0.7 5,120,419 - PS417_23680 0.31 -0.9 5,120,419 - PS417_23680 0.31 +0.6 5,120,419 - PS417_23680 0.31 +0.4 5,120,439 + PS417_23680 0.33 +0.8 5,120,440 - PS417_23680 0.34 +0.5 5,120,559 + PS417_23680 0.46 +1.1 5,120,560 - PS417_23680 0.46 -0.1 5,120,560 - +1.1 5,120,595 + PS417_23680 0.49 +0.1 5,120,595 + PS417_23680 0.49 +0.8 5,120,875 - PS417_23680 0.78 +0.9 5,121,160 + +0.2 5,121,161 - -0.9 5,121,210 + -0.1 5,121,363 + +0.1 5,121,443 - +0.0 5,121,563 + PS417_23685 0.11 +0.2 5,121,564 - PS417_23685 0.11 -0.5 5,121,764 + PS417_23685 0.26 -1.4 5,121,764 + PS417_23685 0.26 -0.2 5,121,764 + PS417_23685 0.26 -1.2 5,121,764 + PS417_23685 0.26 -0.2 5,121,765 - PS417_23685 0.26 -0.3 5,121,866 + PS417_23685 0.33 -0.0 5,121,866 + PS417_23685 0.33 +0.1 5,121,866 + PS417_23685 0.33 -0.6 5,121,867 - PS417_23685 0.33 +0.2 5,121,867 - PS417_23685 0.33 +0.0 5,122,010 + PS417_23685 0.44 +1.1 5,122,010 + PS417_23685 0.44 +0.3 5,122,017 - PS417_23685 0.44 +0.6 5,122,036 - PS417_23685 0.45 +0.3 5,122,082 + PS417_23685 0.49 -0.2 5,122,088 + PS417_23685 0.49 -0.2 5,122,088 + PS417_23685 0.49 -1.2 5,122,089 - +1.1 5,122,089 - PS417_23685 0.49 +0.8
Or see this region's nucleotide sequence