Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21855 and PS417_21860 overlap by 4 nucleotides PS417_21860 and PS417_21865 overlap by 4 nucleotides PS417_21865 and PS417_21870 are separated by 232 nucleotides
PS417_21855: PS417_21855 - hypothetical protein, at 4,745,409 to 4,746,110
_21855
PS417_21860: PS417_21860 - hypothetical protein, at 4,746,107 to 4,746,430
_21860
PS417_21865: PS417_21865 - hypothetical protein, at 4,746,427 to 4,746,750
_21865
PS417_21870: PS417_21870 - glycerophosphodiester phosphodiesterase, at 4,746,983 to 4,748,110
_21870
Position (kb)
4746
4747 Strain fitness (log2 ratio)
-1
0
1 at 4745.448 kb on + strand at 4745.530 kb on + strand, within PS417_21855 at 4745.608 kb on - strand, within PS417_21855 at 4745.860 kb on - strand, within PS417_21855 at 4745.978 kb on - strand at 4746.134 kb on + strand at 4746.134 kb on + strand at 4746.135 kb on - strand at 4746.135 kb on - strand at 4746.138 kb on - strand at 4746.138 kb on - strand at 4746.148 kb on - strand, within PS417_21860 at 4746.480 kb on + strand at 4746.480 kb on + strand, within PS417_21865 at 4746.481 kb on - strand, within PS417_21865 at 4746.481 kb on - strand, within PS417_21865 at 4746.482 kb on + strand, within PS417_21865 at 4746.482 kb on + strand, within PS417_21865 at 4746.668 kb on + strand, within PS417_21865 at 4746.669 kb on - strand, within PS417_21865 at 4746.753 kb on + strand at 4746.959 kb on + strand at 4746.960 kb on - strand at 4746.982 kb on + strand at 4746.983 kb on - strand at 4747.194 kb on - strand, within PS417_21870 at 4747.231 kb on - strand, within PS417_21870 at 4747.231 kb on - strand, within PS417_21870
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 4,745,448 + -0.4 4,745,530 + PS417_21855 0.17 -0.1 4,745,608 - PS417_21855 0.28 +0.7 4,745,860 - PS417_21855 0.64 +0.6 4,745,978 - -0.3 4,746,134 + +0.5 4,746,134 + +0.3 4,746,135 - +0.0 4,746,135 - +0.0 4,746,138 - -0.4 4,746,138 - -0.2 4,746,148 - PS417_21860 0.13 -0.4 4,746,480 + +0.5 4,746,480 + PS417_21865 0.16 +0.8 4,746,481 - PS417_21865 0.17 +0.5 4,746,481 - PS417_21865 0.17 +0.9 4,746,482 + PS417_21865 0.17 -0.0 4,746,482 + PS417_21865 0.17 -1.2 4,746,668 + PS417_21865 0.74 +0.5 4,746,669 - PS417_21865 0.75 +0.7 4,746,753 + -0.5 4,746,959 + -0.1 4,746,960 - +0.1 4,746,982 + -1.6 4,746,983 - -0.4 4,747,194 - PS417_21870 0.19 +0.1 4,747,231 - PS417_21870 0.22 -0.9 4,747,231 - PS417_21870 0.22 +0.1
Or see this region's nucleotide sequence